genome-sci / python_bioinfo_2022Links
☆14Updated 2 years ago
Alternatives and similar repositories for python_bioinfo_2022
Users that are interested in python_bioinfo_2022 are comparing it to the libraries listed below
Sorting:
- NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)☆43Updated 4 years ago
- RNAseq pipeline centered on Salmon☆29Updated 9 months ago
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆15Updated 4 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 3 months ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆76Updated last month
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated 3 weeks ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆98Updated 2 weeks ago
- Analysis pipeline for ATAC-seq data☆72Updated last year
- A docker image for single-cell analysis☆88Updated 7 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- Tools for working with BUS files☆101Updated 3 months ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆167Updated 3 months ago
- Basic workflow for ATAC-seq analysis☆83Updated last year
- machine-readable file format for genomic library sequence and structure☆121Updated this week
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆165Updated 3 months ago
- Introduction to bulk RNA-seq☆120Updated 4 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- ☆20Updated last year
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆61Updated 3 weeks ago
- ☆41Updated last week
- Quantification of transposable element expression using RNA-seq☆74Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- A tool to facilitate comparative visualisation of CLIP data☆15Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆140Updated last year
- ☆63Updated last year
- Normalization of RNA-seq gene expression☆93Updated last month
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆112Updated last year
- Tool for plotting sequencing data along genomic coordinates.☆308Updated 2 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago