Alternatives and similar repositories for python_bioinfo_2022:

Users that are interested in python_bioinfo_2022 are comparing it to the libraries listed below

• Kan-E / RNAseqChef
  Web app for automated, systematic, and integrated RNA-seq differential expression analysis
  ☆14Updated last month
• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆27Updated 3 months ago
• Linlab-slu / TSSr
  ☆11Updated 3 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆108Updated 3 weeks ago
• misshie / ngsdat2
  NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)
  ☆42Updated 3 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 months ago
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆41Updated last year
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated 2 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆83Updated 2 weeks ago
• gexijin / shinygo
  ☆25Updated 2 weeks ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆48Updated this week
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆111Updated 2 years ago
• tseemann / PEAR
  Pair-End AssembeR
  ☆30Updated 10 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆100Updated 3 months ago
• ponnhide / PySanger
  A Python module to analyze Sanger sequencing results.
  ☆24Updated last year
• boboppie / RiboTaper
  A copy of RiboTaper v1.2
  ☆10Updated 3 years ago
• cancerit / NanoSeq
  Analysis software for Nanorate Sequencing (NanoSeq) experiments
  ☆15Updated last month
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 8 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆119Updated 2 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆43Updated 2 years ago
• epi2me-labs / wf-basecalling
  ☆35Updated 3 weeks ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆88Updated 2 months ago
• BioinfoUNIBA / REDItools2
  ☆54Updated 3 years ago
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆67Updated this week
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆48Updated 4 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆58Updated 11 months ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆42Updated 3 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆72Updated this week
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆24Updated 3 months ago