sandberg-lab / Spreading-CorrectionLinks
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
☆15Updated 4 years ago
Alternatives and similar repositories for Spreading-Correction
Users that are interested in Spreading-Correction are comparing it to the libraries listed below
Sorting:
- Evolutionary Transcriptomics with R☆43Updated last week
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- ☆21Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last week
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- ☆29Updated 4 years ago
- Adapters for trimming☆30Updated 6 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- A reference viral database (RVDB)☆26Updated 6 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago