ag-warscheid / autoprotLinks
autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the analysis pipeline to specific experimental strategies.
☆9Updated 2 weeks ago
Alternatives and similar repositories for autoprot
Users that are interested in autoprot are comparing it to the libraries listed below
Sorting:
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- Code for LazyAF pipeline☆20Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last week
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆11Updated 2 years ago
- Omics data analysis☆15Updated 3 months ago
- Associated code for EvoWeaver publication☆15Updated last month
- ☆18Updated 11 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 5 months ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆33Updated 2 months ago
- Open source short linear motif discovery and sequence analysis☆24Updated 9 months ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- Decoding the functional networks of non-model organisms☆11Updated last month
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆12Updated 3 weeks ago
- A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions☆13Updated last month
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 5 months ago
- Deep learning embedding for nucleotide sequences☆18Updated 3 months ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Updated last year
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 5 months ago
- a collection of colabs useful for molecular biology☆30Updated last year
- PRedictor of IMmunogenic Epitopes☆22Updated last month
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year