A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
☆39Jun 17, 2026Updated 4 months ago
Alternatives and similar repositories for MPRAflow
Users that are interested in MPRAflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analyse enhancer strength based on MPRA experiments.☆13Nov 12, 2020Updated 5 years ago
- With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IG…☆17Oct 12, 2026Updated 2 weeks ago
- Libraries and command-line utilities for big data genomic analysis☆10Feb 27, 2024Updated 2 years ago
- STARRPeaker: STARR-seq peak caller☆17Jul 6, 2022Updated 4 years ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆77Apr 28, 2023Updated 3 years ago
- Analysis and Visualization of Ribosome Profiling Data☆12Dec 14, 2019Updated 6 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated 2 months ago
- ☆18Aug 14, 2017Updated 9 years ago
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆31Feb 6, 2025Updated last year
- A python wrapper for interacting with the LabArchives API.☆10Aug 10, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- 4C-seq processing pipeline☆28Mar 17, 2025Updated last year
- Code associated with MIX-seq manuscript☆16Aug 26, 2020Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆36May 11, 2026Updated 5 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆32Oct 7, 2022Updated 4 years ago
- code to run sei and obtain sei and sequence class predictions☆119Dec 20, 2022Updated 3 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 4 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆119Sep 16, 2026Updated last month
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆53Aug 13, 2024Updated 2 years ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Concise: Keras extension for regulatory genomics☆36Dec 26, 2022Updated 3 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 8 years ago
- Benchmarking approaches to fine-tune AlphaGenome on MPRA across distributional shifts☆14Oct 13, 2026Updated 2 weeks ago
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- ☆13Mar 27, 2026Updated 7 months ago
- A pipeline for phasing UK Biobank whole genome sequence data☆20Mar 21, 2023Updated 3 years ago
- ☆12Mar 20, 2021Updated 5 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆25Apr 25, 2023Updated 3 years ago
- Code for EpiMap data browser☆14Jun 4, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DCP Expression Matrix Service☆12Feb 15, 2026Updated 8 months ago
- ☆16Sep 18, 2026Updated last month
- Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)☆13Mar 7, 2024Updated 2 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆188Mar 19, 2026Updated 7 months ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Oct 3, 2026Updated 3 weeks ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated last year