shendurelab / MPRAflow
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
☆32Updated 3 months ago
Alternatives and similar repositories for MPRAflow:
Users that are interested in MPRAflow are comparing it to the libraries listed below
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- BAGEL software☆27Updated last year
- IDR☆31Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last month
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 6 years ago
- Motif manipulation functions for R.☆28Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 4 years ago
- Analyse enhancer strength based on MPRA experiments.☆12Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆51Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆38Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆57Updated 3 months ago
- ☆33Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- simplified cellranger for long-read data☆18Updated last week
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 3 years ago