shendurelab / MPRAflow
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
☆32Updated 2 months ago
Alternatives and similar repositories for MPRAflow:
Users that are interested in MPRAflow are comparing it to the libraries listed below
- Epimap processing and analysis code repository☆33Updated 2 years ago
- IDR☆31Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 2 weeks ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- Analyse enhancer strength based on MPRA experiments.☆12Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 7 months ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- BAGEL software☆27Updated last year
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆26Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- ☆47Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- ☆36Updated 6 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆32Updated 8 months ago
- Motif manipulation functions for R.☆28Updated 4 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year