shendurelab / MPRAflowLinks
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
☆34Updated 10 months ago
Alternatives and similar repositories for MPRAflow
Users that are interested in MPRAflow are comparing it to the libraries listed below
Sorting:
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- BAGEL software☆28Updated last year
- IDR☆30Updated 2 years ago
- ☆38Updated 7 years ago
- An R interface to the MEME Suite☆53Updated 5 months ago
- binned motif enrichment analysis and visualisation☆43Updated 2 weeks ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- chia pet analysis software☆25Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- ☆41Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago