shendurelab / MPRAflowLinks
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
☆35Updated last year
Alternatives and similar repositories for MPRAflow
Users that are interested in MPRAflow are comparing it to the libraries listed below
Sorting:
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- IDR☆31Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- ☆38Updated 7 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- ☆20Updated 6 years ago
- Transcription Factor Enrichment Analysis☆36Updated last month
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆55Updated 2 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated 3 weeks ago
- ☆40Updated 6 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- ☆23Updated 10 months ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago