Identification of persistent local patterns in spatial omics data
☆17May 6, 2025Updated last year
Alternatives and similar repositories for kasumi
Users that are interested in kasumi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiview Intercellular SpaTial modeling framework☆72Jan 15, 2026Updated 4 months ago
- Analyzing cellular niches in spatial transcriptomics data☆35Nov 18, 2024Updated last year
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 11 months ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆16Oct 23, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆66May 12, 2026Updated 2 weeks ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆29May 18, 2026Updated last week
- ☆37Apr 21, 2026Updated last month
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 5 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆15Jul 5, 2023Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Jan 9, 2026Updated 4 months ago
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- ☆18May 15, 2025Updated last year
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated 11 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated 9 months ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 5 months ago
- ☆32Jan 7, 2026Updated 4 months ago
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆15Nov 24, 2025Updated 6 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- ☆16May 13, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆36May 19, 2026Updated last week
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- ☆10Jun 5, 2021Updated 4 years ago
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆23Jan 12, 2026Updated 4 months ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Jan 17, 2026Updated 4 months ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 2 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆23Feb 20, 2025Updated last year
- A public clone of the HypoMap Figure & analysis repository.☆11Sep 26, 2022Updated 3 years ago
- Foundation of integer range manipulation in Bioconductor☆23May 16, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- sougou医学词库爬取☆13Nov 21, 2019Updated 6 years ago
- ☆27Jan 29, 2026Updated 4 months ago
- ☆20Dec 19, 2024Updated last year
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated last week
- Bioinformatics web-platform visualisation dashboard creation☆42May 21, 2026Updated last week
- Jupyter notebook based multiplex image processing pipeline.☆10May 15, 2026Updated 2 weeks ago
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆15Nov 30, 2020Updated 5 years ago