Identification of persistent local patterns in spatial omics data
☆18May 6, 2025Updated last year
Alternatives and similar repositories for kasumi
Users that are interested in kasumi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiview Intercellular SpaTial modeling framework☆74Jan 15, 2026Updated 6 months ago
- Analyzing cellular niches in spatial transcriptomics data☆38Nov 18, 2024Updated last year
- MiC is an ImageJ plugin to compare segmentation masks☆20Jul 16, 2026Updated last week
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆16Apr 9, 2026Updated 3 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.☆32Jun 10, 2025Updated last year
- Generate a spatial catalogue from multiplexed imaging data☆19Jun 12, 2025Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆24Jan 9, 2026Updated 6 months ago
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 7 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 7 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆306Jul 16, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆16Oct 23, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆62May 11, 2026Updated 2 months ago
- Analyzes www.wahl-o-mat.de German political party data☆16Feb 8, 2025Updated last year
- ☆67May 31, 2026Updated last month
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated last year
- ☆32Jan 7, 2026Updated 6 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- ☆10Jun 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- ☆10Mar 25, 2024Updated 2 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated last year
- A public clone of the HypoMap Figure & analysis repository.☆12Sep 26, 2022Updated 3 years ago
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆22Apr 3, 2026Updated 3 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆61Updated this week
- ☆16May 13, 2022Updated 4 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- sougou医学词库爬取☆13Nov 21, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioinformatics web-platform visualisation dashboard creation☆46Updated this week
- Foundation of integer range manipulation in Bioconductor☆23Jul 1, 2026Updated 3 weeks ago
- ☆43Jun 3, 2026Updated last month
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆15Nov 30, 2020Updated 5 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆30Jul 20, 2026Updated last week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated 11 months ago
- ☆20Dec 19, 2024Updated last year