Code and files for the main nf-core website.
☆98Sep 20, 2026Updated this week
Alternatives and similar repositories for website
Users that are interested in website are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Aug 10, 2026Updated last month
- ☆12Feb 16, 2024Updated 2 years ago
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- Python package with helper tools for the nf-core community.☆322Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- A GitHub action to install Nextflow☆31Aug 20, 2026Updated last month
- Generate beautiful API documentation for Nextflow pipelines☆19Aug 9, 2026Updated last month
- Proteomics label-free quantification (LFQ) analysis pipeline☆38Jan 13, 2025Updated last year
- Command line tool for Wave containers provisioning service☆19Updated this week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆23Sep 12, 2026Updated last week
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Nextflow Tower CLI tool☆55Sep 14, 2026Updated last week
- Web application to collect and visualise data across multiple MultiQC runs.☆96Dec 13, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- Workflow management with Nextflow and nf-core☆33Jan 21, 2025Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated 2 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jul 28, 2026Updated last month
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆603Sep 14, 2026Updated last week
- Torrent Mapping Alignment Program☆20Mar 2, 2013Updated 13 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated last month
- A method to improve mappings on circular genomes, using the BWA mapper☆11Mar 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆31May 17, 2026Updated 4 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,370Updated this week
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆429Updated this week
- quantms workflow for DIANN tool including DIA and DDA analysis☆19Updated this week
- Simple test framework for Nextflow pipelines☆191Apr 27, 2026Updated 4 months ago
- Test data to be used for automated testing with the nf-core pipelines☆164Updated this week
- A curated collection of Nextflow implementation patterns☆373Nov 21, 2023Updated 2 years ago
- A tool for creating resource prediction models for scientific workflows☆13Feb 27, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple Jupyter chat UI for LangChain☆10Jul 3, 2024Updated 2 years ago
- Nascent Transcription Processing Pipeline☆25Sep 1, 2026Updated 2 weeks ago
- Nextflow Tower system☆154Jan 30, 2025Updated last year
- nf-test utility functions☆13Updated this week
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 26, 2026Updated 3 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆109Sep 1, 2026Updated 2 weeks ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆198Updated this week