Alternatives and similar repositories for website

Users that are interested in website are comparing it to the libraries listed below

• nf-core / rnafusion
  RNA-seq analysis pipeline for detection of gene-fusions
  ☆170Updated 3 weeks ago
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆150Updated this week
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆151Updated this week
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆101Updated this week
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆83Updated 2 weeks ago
• igvteam / igv-webapp
  IGV Web App
  ☆127Updated 3 weeks ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆138Updated 3 years ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆280Updated 4 years ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆112Updated this week
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆105Updated 2 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated last month
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆161Updated last month
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆186Updated 2 weeks ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆114Updated 8 months ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated this week
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆120Updated last year
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆148Updated 6 months ago
• DiltheyLab / HLA-LA
  Fast HLA type inference from whole-genome data
  ☆141Updated 10 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆173Updated 2 years ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆231Updated 8 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated 2 weeks ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆256Updated 6 months ago
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆131Updated last year
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆167Updated 2 months ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated this week
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆89Updated last week
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆155Updated 2 weeks ago
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆176Updated last year