nf-core / websiteLinks
Code and files for the main nf-core website.
☆85Updated this week
Alternatives and similar repositories for website
Users that are interested in website are comparing it to the libraries listed below
Sorting:
- RNA-seq analysis pipeline for detection of gene-fusions☆170Updated 3 weeks ago
- Long read production pipelines☆151Updated this week
- Test data to be used for automated testing with the nf-core pipelines☆150Updated this week
- Call and score variants from WGS/WES of rare disease patients.☆112Updated this week
- IGV Web App☆127Updated 3 weeks ago
- GATK RNA-Seq Variant Calling in Nextflow☆138Updated 3 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆105Updated 2 months ago
- minimal example implementations for bioinformatics workflow managers☆280Updated 4 years ago
- A proof of concept of RNAseq pipeline☆83Updated 2 weeks ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆101Updated this week
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆161Updated last month
- Educational materials for learning WDL☆131Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆107Updated this week
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- Pipeline to fetch metadata and raw FastQ files from public databases☆186Updated 2 weeks ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆167Updated 2 months ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- Documentation of the Snakemake-Workflows project☆156Updated 4 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆155Updated 2 weeks ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆89Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated this week
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆165Updated 2 weeks ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated 2 weeks ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆231Updated 8 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Updated last week
- A small-RNA sequencing analysis pipeline☆98Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆173Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 3 years ago
- Web application to explore the Sequence Read Archive.☆218Updated 6 months ago