Code and files for the main nf-core website.
☆91Apr 29, 2026Updated this week
Alternatives and similar repositories for website
Users that are interested in website are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated 2 weeks ago
- ☆12Feb 16, 2024Updated 2 years ago
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package with helper tools for the nf-core community.☆303Updated this week
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- A GitHub action to install Nextflow☆29Updated this week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Updated this week
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Jan 13, 2025Updated last year
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆94Dec 13, 2024Updated last year
- Workflow management with Nextflow and nf-core☆30Jan 21, 2025Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆563Apr 21, 2026Updated last week
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 10 months ago
- A method to improve mappings on circular genomes, using the BWA mapper☆10Mar 4, 2022Updated 4 years ago
- ☆15Apr 2, 2025Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆34Apr 16, 2026Updated 2 weeks ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated 3 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,271Updated this week
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆413Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple test framework for Nextflow pipelines☆184Updated this week
- A curated collection of Nextflow implementation patterns☆370Nov 21, 2023Updated 2 years ago
- Test data to be used for automated testing with the nf-core pipelines☆160Updated this week
- A tool for creating resource prediction models for scientific workflows☆13Feb 27, 2024Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- Nascent Transcription Processing Pipeline☆22Updated this week
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 13, 2024Updated last year
- nf-test utility functions☆12Mar 5, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆190Updated this week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 11 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆105Updated this week
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- ☆19Apr 20, 2026Updated last week
- Config files used to define parameters specific to compute environments at different Institutions☆108Apr 25, 2026Updated last week
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year