GenomicsAotearoa / KakapoLinks
Scripts and code for Kākāpō genomic data
☆14Updated last year
Alternatives and similar repositories for Kakapo
Users that are interested in Kakapo are comparing it to the libraries listed below
Sorting:
- This is the Haplotypo repository☆20Updated last year
- scripts used to download and analyze insect assemblies from GenBank☆15Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Transfer coordinates across genomes☆23Updated last month
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆51Updated last month
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last week
- visual analysis of your VCF files☆34Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Interactive phylogenetic tree viewer/editor☆47Updated last year
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆17Updated 5 months ago
- Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…☆18Updated last month
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Updated 3 years ago
- Implementation of ToL genome assembly workflows☆20Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago
- ☆24Updated 2 months ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆20Updated 9 months ago
- Toolkit to convert the output of common variant calling programs to VCF☆23Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆22Updated 2 years ago
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 8 months ago