GenomicsAotearoa / KakapoLinks
Scripts and code for Kākāpō genomic data
☆14Updated last year
Alternatives and similar repositories for Kakapo
Users that are interested in Kakapo are comparing it to the libraries listed below
Sorting:
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…☆18Updated last month
- Pipeline for the identification of (coding) gene structures in draft genomes.☆28Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- scripts used to download and analyze insect assemblies from GenBank☆15Updated 4 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- This is the Haplotypo repository☆20Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 3 months ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆17Updated 3 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆50Updated 8 months ago
- ☆20Updated 3 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 9 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 7 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆22Updated 2 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Interactive phylogenetic tree viewer/editor☆47Updated last year
- A Nextflow pipeline for evaluating assembly quality☆34Updated this week
- Implementation of ToL genome assembly workflows☆20Updated this week