Generate beautiful API documentation for Nextflow pipelines
☆18Aug 9, 2026Updated this week
Alternatives and similar repositories for nf-docs
Users that are interested in nf-docs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 8 months ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- nf-test utility functions☆12May 22, 2026Updated 2 months ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- High-performance UMI tools for NGS data analysis☆49Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A nextflow pipeline for calling exome CNVs☆14Updated this week
- Nextflow workshop materials November 2025☆19Jun 9, 2026Updated 2 months ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Jul 28, 2026Updated last week
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago
- Experimental features for Nextflow☆53Dec 30, 2025Updated 7 months ago
- Quality of life improvements for Bioinformatics in Python.☆35Jul 29, 2026Updated last week
- Command line tool for Wave containers provisioning service☆19Jul 24, 2026Updated 2 weeks ago
- The Nextflow language server☆31Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36May 29, 2026Updated 2 months ago
- ☆11Sep 7, 2023Updated 2 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Spiritual successor to picard for sequencing qc☆58Jul 19, 2026Updated 3 weeks ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated 2 years ago
- fastVEP: High-performance Variant Effect Predictor in Rust☆116Updated this week
- Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows☆35Updated this week
- A manifesto for AI-assisted modernisation of bioinformatics software.☆53Jun 16, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 10 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆25Sep 12, 2024Updated last year
- Test data for MultiQC.☆24May 12, 2026Updated 2 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆34Mar 10, 2026Updated 5 months ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆22Jul 27, 2026Updated last week
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- ☆10Apr 16, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Jun 25, 2026Updated last month
- Workflow for somatic variant calling of long read data☆26Jul 17, 2026Updated 3 weeks ago
- Simple test framework for Nextflow pipelines☆190Apr 27, 2026Updated 3 months ago
- Tools for working with Variant Call Format files.☆11Jul 2, 2026Updated last month
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- gatk4 RNA variant calling pipeline☆61Jul 28, 2026Updated last week
- On-demand containers provisioning service☆59Jul 29, 2026Updated last week