Alternatives and similar repositories for wave

Users that are interested in wave are comparing it to the libraries listed below

• seqeralabs / tower-cli
  Nextflow Tower CLI tool
  ☆48Updated this week
• awslabs / linter-rules-for-nextflow
  Linter rules for Nextflow DSL scripts
  ☆34Updated last week
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆26Updated last month
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆75Updated this week
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆38Updated last year
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 7 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆100Updated this week
• nf-core / setup-nextflow
  A GitHub action to install Nextflow
  ☆19Updated this week
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆30Updated last week
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated this week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 10 months ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆23Updated 2 weeks ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆39Updated 2 weeks ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆29Updated last week
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆31Updated 2 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• godotgildor / fastq_compression_comparison
  Creating a simple Docker image to help perform comparisons for FASTQ compression
  ☆34Updated 2 years ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆43Updated this week
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆64Updated 2 weeks ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated 3 weeks ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated this week
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 3 months ago
• nextflow-io / nf-prov
  ☆30Updated last month
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 6 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 3 weeks ago
• mritchielab / FLAMES
  A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
  ☆36Updated last week
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last month