mpiersonsmela / SeqVerifyLinks
Analyzes whole genome sequencing data for gene-editing verification
☆10Updated 3 months ago
Alternatives and similar repositories for SeqVerify
Users that are interested in SeqVerify are comparing it to the libraries listed below
Sorting:
- Efficient querying of biological databases☆42Updated 3 months ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Updated last year
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆24Updated 3 weeks ago
- A command line utilty for working with BINSEQ files☆35Updated this week
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Updated 10 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- Parsing MHC nomenclature in the wild☆18Updated last week
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Updated last month
- A high efficiency binary format for sequencing data☆94Updated last week
- Build and maintain multiple custom conda environments all in one place.☆40Updated last year
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- Fast interval intersection library☆44Updated 5 months ago
- A better, faster way to count guides in CRISPR screens.☆34Updated 9 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- ☆16Updated last year
- Nextflow plugin implementation skeleton☆11Updated 5 months ago
- ☆21Updated last month
- Catalogue of pairwise alignment algorithms and benchmarks☆24Updated 3 weeks ago
- Convert vcf in parquet☆29Updated last year
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- SQL support plugin for Nextflow☆32Updated 4 months ago
- Rust in bioinformatics and computational biology☆19Updated 3 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Alignment-based gene expression quantification☆35Updated 5 months ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 6 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated last year
- Variant call adjudication☆16Updated last year
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Updated 2 months ago