Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
☆17Jun 14, 2023Updated 2 years ago
Alternatives and similar repositories for haplocheck
Users that are interested in haplocheck are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mtDNA Variant Caller☆35Dec 23, 2024Updated last year
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆78Feb 28, 2023Updated 3 years ago
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- ☆14Oct 29, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated this week
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated last year
- Free mtDNA Haplogroup Classification Service☆32Jul 3, 2025Updated 9 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 6 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated 10 months ago
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dinoflagellate Annotation Workflow☆15Oct 3, 2022Updated 3 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.☆36Mar 19, 2026Updated 3 weeks ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Mar 9, 2026Updated last month
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated last year
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆27Mar 8, 2026Updated last month
- ☆10Oct 31, 2022Updated 3 years ago
- Tools for working with Variant Call Format files.☆12Jan 22, 2026Updated 2 months ago
- ☆17Jan 3, 2019Updated 7 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- A bioinformatics pipeline to analyze mtDNA from NGS data☆99Mar 5, 2024Updated 2 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and scalable variant annotation tool☆30May 1, 2022Updated 3 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆49May 27, 2025Updated 10 months ago
- ☆11Mar 23, 2026Updated 3 weeks ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Oct 29, 2023Updated 2 years ago
- ☆16May 19, 2025Updated 10 months ago
- ☆23Mar 20, 2024Updated 2 years ago
- Mapping toolset to migrate/transform existing datasets to HL7 FHIR☆17Mar 11, 2026Updated last month