secastel / allelecounterLinks
Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.
☆25Updated 7 years ago
Alternatives and similar repositories for allelecounter
Users that are interested in allelecounter are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- PHAST☆77Updated this week
- parallelized blat with multi-threads support☆53Updated 10 months ago
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- BigWig and BAM utilities☆99Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- Human reference genome analysis sets☆56Updated 2 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 9 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 5 months ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago