Alternatives and similar repositories for SpatialTranscriptomics

Users that are interested in SpatialTranscriptomics are comparing it to the libraries listed below

• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆38Updated 4 years ago
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 4 years ago
• Junjie-Hu / NSCLC-immunotherapy
  ☆28Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated last week
• PansccSpat / SpatialMapESCC
  ☆22Updated last year
• Patchouli-M / SequencingCancerFinder
  ☆41Updated 6 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆85Updated 11 months ago
• aliceygao / pan-Fibroblast
  ☆53Updated last year
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆130Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆53Updated 11 months ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• QiangShiPKU / CoVarNet
  ☆50Updated 4 months ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆57Updated last year
• yqq-chen / CRC_ICB
  ☆32Updated last year
• Banovich-Lab / Spatial_PF
  ☆34Updated last month
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• ma-jq / B
  ☆29Updated last year
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆104Updated 6 months ago
• jalon9358 / LianLab_CRCLM
  ☆15Updated 2 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 9 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 5 months ago
• Miaoyx323 / stCancer
  ☆22Updated last year
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆71Updated 3 years ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆19Updated last year
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 10 months ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆86Updated 2 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆30Updated last month
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated last year