Alternatives and similar repositories for SpatialTranscriptomics

Users that are interested in SpatialTranscriptomics are comparing it to the libraries listed below

• Junjie-Hu / NSCLC-immunotherapy
  ☆25Updated last year
• Miaoyx323 / stCancer
  ☆22Updated 9 months ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 6 months ago
• PansccSpat / SpatialMapESCC
  ☆20Updated 10 months ago
• aliceygao / pan-Fibroblast
  ☆47Updated last year
• yqq-chen / CRC_ICB
  ☆32Updated last year
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆48Updated 2 months ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆51Updated 7 months ago
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• ma-jq / B
  ☆25Updated last year
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆68Updated 2 years ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆51Updated 4 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆38Updated 3 years ago
• maximemeylan / Meylan_et_al_2022
  ☆19Updated 3 years ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆68Updated 7 months ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆19Updated last year
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆28Updated last year
• bio-Pixel / panVC
  ☆51Updated last year
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆123Updated 11 months ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆57Updated last week
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆42Updated 2 years ago
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated last year
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 6 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆47Updated 5 months ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago