Alternatives and similar repositories for panVC

Users that are interested in panVC are comparing it to the libraries listed below

• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆48Updated last month
• aliceygao / pan-Fibroblast
  ☆46Updated 11 months ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆68Updated 2 years ago
• Lan-lab / sc-GC
  ☆31Updated 2 years ago
• Chuxj / CRC-atlas
  ☆28Updated last year
• wu-yc / neutrophil
  ☆15Updated 2 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• yqq-chen / CRC_ICB
  ☆32Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 5 months ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆58Updated 2 years ago
• ma-jq / B
  ☆25Updated last year
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆38Updated last year
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆51Updated 4 years ago
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆69Updated last year
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆22Updated 2 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆20Updated last year
• chloelulu / scMayoMap
  ☆22Updated last year
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆62Updated 2 years ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆83Updated 2 years ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 4 months ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆79Updated 9 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆42Updated 2 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆83Updated last year
• campbio / decontX
  Methods for decontamination of single cell data
  ☆47Updated 5 months ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆119Updated 11 months ago
• PansccSpat / SpatialMapESCC
  ☆18Updated 9 months ago