Alternatives and similar repositories for panVC

Users that are interested in panVC are comparing it to the libraries listed below

• youqiongye / CRC_scRNAseq
  ☆49Updated 3 years ago
• Lan-lab / sc-GC
  ☆32Updated 3 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆53Updated 7 months ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆74Updated 3 years ago
• aliceygao / pan-Fibroblast
  ☆57Updated last year
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆24Updated 3 years ago
• Chuxj / CRC-atlas
  ☆33Updated last year
• yqq-chen / CRC_ICB
  ☆34Updated 2 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 11 months ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆41Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆70Updated last week
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆81Updated 5 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆87Updated 3 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆85Updated 2 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆81Updated last year
• chloelulu / scMayoMap
  ☆25Updated 2 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆116Updated 9 months ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆65Updated 3 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆77Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆54Updated 2 weeks ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆33Updated 3 months ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆73Updated 5 months ago
• wu-yc / neutrophil
  ☆17Updated 2 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated 2 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated 6 months ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆65Updated 2 years ago
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆76Updated 2 years ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆30Updated last year