RubD / GiottoLinks
Spatial omics analysis toolbox
☆16Updated last year
Alternatives and similar repositories for Giotto
Users that are interested in Giotto are comparing it to the libraries listed below
Sorting:
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- ☆40Updated 2 years ago
- Functional Inference of Gene Regulation☆48Updated last year
- Repository for codes for the HBCA paper☆38Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- R package IReNA☆28Updated 11 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- ☆39Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Updated 8 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 11 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- ☆32Updated 4 years ago
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago
- Integration of gut cell atlases☆28Updated this week
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆24Updated 6 months ago
- ☆59Updated 4 months ago
- ☆21Updated 8 months ago
- ☆29Updated 2 years ago
- ☆39Updated 2 months ago
- ☆18Updated last year
- ☆59Updated last year
- scWGCNA☆61Updated 2 years ago
- Codes used in LISTA project.☆14Updated last year
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆54Updated last year
- Code used to process the data of the HBCA project☆32Updated last year
- ☆16Updated 4 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year