Alternatives and similar repositories for Giotto

Users that are interested in Giotto are comparing it to the libraries listed below

• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 2 weeks ago
• molgenis / scRNA-seq
  ☆18Updated last year
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆32Updated 9 months ago
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• WanluLiuLab / scAtlasVAE
  ☆37Updated 2 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆38Updated 4 years ago
• wenweixiong / MARVEL
  ☆49Updated last year
• chensujun / scRNA
  ☆32Updated 4 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 11 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆27Updated 3 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 4 months ago
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 9 months ago
• haoshijie13 / LISTA
  Codes used in LISTA project.
  ☆12Updated last year
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• snehamitra / SCARlink
  ☆56Updated 2 months ago
• satijalab / Mixscale
  ☆19Updated 4 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• xmuhuanglab / eNet
  ☆12Updated 2 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• gxiaolab / scAllele
  ☆37Updated last year
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆82Updated 2 years ago
• Teichlab / HCA_Heart_ver2
  ☆37Updated 2 years ago