Alternatives and similar repositories for Giotto

Users that are interested in Giotto are comparing it to the libraries listed below

• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 10 months ago
• Teichlab / HCA_Heart_ver2
  ☆39Updated 2 years ago
• UPSUTER / GEMLI
  ☆32Updated 8 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆22Updated last year
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• haoshijie13 / LISTA
  Codes used in LISTA project.
  ☆14Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆76Updated 2 months ago
• WanluLiuLab / scAtlasVAE
  ☆38Updated 3 months ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• gxiaolab / scAllele
  ☆38Updated last month
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 11 months ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆33Updated 10 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 6 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆37Updated 4 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆38Updated 4 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆40Updated last week
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 3 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago