hiclib / pastis
Poisson-based algorithm for stable inference of DNA Structure
☆36Updated 3 years ago
Alternatives and similar repositories for pastis:
Users that are interested in pastis are comparing it to the libraries listed below
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆41Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated last week
- chia pet analysis software☆25Updated 6 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- IDR☆31Updated 2 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆12Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆28Updated 9 months ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆16Updated 2 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 4 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- QC report generator for Hi-C pairs file☆11Updated 4 years ago
- ☆36Updated 5 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- 4C-seq processing pipeline☆23Updated 3 weeks ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆20Updated 4 years ago
- A preprocessing and QC pipeline for HiChIP data☆36Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆108Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- Genomic Association Tester☆31Updated last year