hiclib / pastisLinks
Poisson-based algorithm for stable inference of DNA Structure
☆39Updated this week
Alternatives and similar repositories for pastis
Users that are interested in pastis are comparing it to the libraries listed below
Sorting:
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆37Updated 10 years ago
- ☆29Updated 8 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆29Updated 9 months ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- IDR☆31Updated 2 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- QC report generator for Hi-C pairs file☆13Updated 5 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- Normalizing Hi-C contact counts efficiently☆45Updated 7 months ago
- ☆22Updated 5 years ago
- ☆23Updated 5 years ago
- chia pet analysis software☆25Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- 4C-seq processing pipeline☆26Updated 9 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- ☆38Updated 2 years ago