Basic workflow for ATAC-seq analysis
☆95Feb 23, 2024Updated 2 years ago
Alternatives and similar repositories for ATAC-seq
Users that are interested in ATAC-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline for ATAC-seq data☆89Oct 30, 2023Updated 2 years ago
- ☆145Jan 7, 2019Updated 7 years ago
- ☆16Jun 3, 2025Updated 11 months ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆33Nov 11, 2025Updated 6 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆247Mar 23, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- chromatin Variability Across Regions (of the genome!)☆190May 1, 2026Updated 3 weeks ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- an efficient Hi-C data processing pipeline☆18Mar 26, 2024Updated 2 years ago
- ENCODE ATAC-seq pipeline☆450Jul 18, 2024Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆76Aug 3, 2023Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- ☆20Jun 8, 2023Updated 2 years ago
- Resources for phage genomics and annotation☆10Oct 27, 2025Updated 6 months ago
- ☆19Dec 15, 2023Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Aug 5, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Nov 30, 2020Updated 5 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆113Nov 3, 2025Updated 6 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆78Apr 16, 2026Updated last month
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 4 years ago
- ☆58Aug 8, 2024Updated last year
- My youtube programming scripts☆59Jan 16, 2025Updated last year
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆17Feb 2, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆43Jul 20, 2025Updated 10 months ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 5 years ago
- ChIP-seq analysis notes from Ming Tang☆850Aug 5, 2024Updated last year
- AD regulome analysis☆16Apr 4, 2023Updated 3 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 3 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆11May 26, 2023Updated 2 years ago