reskejak / ATAC-seqLinks
Basic workflow for ATAC-seq analysis
☆92Updated last year
Alternatives and similar repositories for ATAC-seq
Users that are interested in ATAC-seq are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for ATAC-seq data☆83Updated 2 years ago
- Links to ATAC-seq analysis tools☆76Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- SNV calling from single cell sequencing☆118Updated last year
- ☆114Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆75Updated 7 months ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆113Updated 10 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 2 months ago
- release version☆57Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- ☆103Updated last month
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆106Updated last month
- Estimate locus specific human LINE-1 expression.☆39Updated 2 months ago
- ☆102Updated 3 months ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated 2 weeks ago
- ☆120Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- ☆145Updated 7 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Analysis of Paired-Tag datasets☆43Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Updated last year
- ☆65Updated last year
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.☆131Updated last week
- ATAC-seq snakemake pipeline☆88Updated 5 years ago