Alternatives and similar repositories for UTMOST

Users that are interested in UTMOST are comparing it to the libraries listed below

• gamazonlab / MR-JTI
  ☆57Updated last year
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆32Updated 9 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 7 months ago
• cuelee / pleio
  ☆19Updated 5 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago
• clagiamba / moloc
  ☆38Updated 5 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Updated last year
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆54Updated 7 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated last week
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• qlu-lab / SUPERGNOVA
  ☆30Updated 4 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆58Updated 4 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆41Updated 4 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 7 months ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆43Updated 3 years ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆39Updated 11 months ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• mkanai / ldsc-network-plot
  Network representation of LDSC results
  ☆31Updated 3 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆72Updated 4 years ago
• hakyimlab / PredictDBPipeline
  ☆16Updated 5 years ago
• eleporcu / TWMR
  ☆23Updated 6 years ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆35Updated 6 months ago
• hakyimlab / scPrediXcan
  ☆40Updated 2 weeks ago
• yanglab-emory / TIGAR
  ☆22Updated last week
• RHReynolds / LDSCforRyten
  S-LDSC scripts for use on MR server.
  ☆10Updated 4 years ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆55Updated last year