Alternatives and similar repositories for isotwas

Users that are interested in isotwas are comparing it to the libraries listed below

• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆18Updated 7 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆37Updated 10 months ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆23Updated 4 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated last month
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆25Updated 2 years ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated this week
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated 2 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 4 months ago
• lilab-bioinfo / xQTLbiolinks
  xQTLbiolinks: an R package for integrative analysis with xQTL data
  ☆17Updated last year
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• cuelee / pleio
  ☆19Updated 2 months ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆19Updated 5 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆50Updated 4 months ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆26Updated last year
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆41Updated 4 years ago
• segrelabgenomics / QTLEnrich
  Assessing enrichment of complex disease or trait associations among QTLs
  ☆15Updated 5 years ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 3 months ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago