Alternatives and similar repositories for isotwas

Users that are interested in isotwas are comparing it to the libraries listed below

• yuanzhongshang / GIFT

  View on GitHub
  ☆21Nov 15, 2024Updated last year
• opain / eQTL_to_TWAS

  View on GitHub
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Jul 2, 2025Updated 7 months ago
• jinghuazhao / EWAS-fusion

  View on GitHub
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Mar 24, 2023Updated 2 years ago
• gamazonlab / MR-JTI

  View on GitHub
  ☆57Jan 16, 2025Updated last year
• jokamoto97 / INTACT

  View on GitHub
  Integration of TWAS and Colocalization Analysis
  ☆17Oct 29, 2024Updated last year
• gandallab / devBrain_xQTL

  View on GitHub
  ☆11May 10, 2025Updated 9 months ago
• ChongWuLab / SUMMIT

  View on GitHub
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Jun 27, 2023Updated 2 years ago
• RayDebashree / PLACO

  View on GitHub
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆39Sep 18, 2025Updated 4 months ago
• scbaca / cwas

  View on GitHub
  Workflow for performing cistrome-wide associations studies
  ☆11Jul 25, 2022Updated 3 years ago
• precimed / python_convert

  View on GitHub
  A collection of various utilities for GWAS summary statistics
  ☆32May 14, 2024Updated last year
• wuyangf7 / OPERA

  View on GitHub
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Sep 26, 2024Updated last year
• opain / TWAS-plotter

  View on GitHub
  R script to make Manhattan-style plot for TWAS
  ☆41Aug 15, 2021Updated 4 years ago
• hakyimlab / summary-gwas-imputation

  View on GitHub
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Aug 28, 2020Updated 5 years ago
• ghm17 / LOGODetect

  View on GitHub
  LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
  ☆28Jul 30, 2025Updated 6 months ago
• bogdanlab / fizi

  View on GitHub
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Aug 10, 2021Updated 4 years ago
• cnfoley / hyprcoloc

  View on GitHub
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆59Feb 12, 2021Updated 5 years ago
• ckhunsr1 / PUMICE

  View on GitHub
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Oct 6, 2023Updated 2 years ago
• smgogarten / GWASTools

  View on GitHub
  Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
  ☆18Mar 18, 2025Updated 10 months ago
• konumat / Trans-Phar

  View on GitHub
  GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline
  ☆19Mar 30, 2021Updated 4 years ago
• Kyoko-wtnb / mvGWAMA

  View on GitHub
  Python script for multivariate GWAS meta-analysis
  ☆24Dec 6, 2024Updated last year
• huwenboshi / hess

  View on GitHub
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42May 2, 2018Updated 7 years ago
• precimed / gsa-mixer

  View on GitHub
  ☆20Sep 12, 2025Updated 5 months ago
• RajLabMSSM / echolocatoR

  View on GitHub
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆43Jan 20, 2023Updated 3 years ago
• precimed / pleiofdr

  View on GitHub
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆36Jun 3, 2025Updated 8 months ago
• hakyimlab / scPrediXcan

  View on GitHub
  ☆40Jan 13, 2026Updated last month
• LidaWangPSU / EXPRESSO

  View on GitHub
  EXpression PREdiction with Summary Statistics Only
  ☆13Dec 10, 2025Updated 2 months ago
• mancusolab / twas_sim

  View on GitHub
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Jun 18, 2023Updated 2 years ago
• bvoightlab / ColocQuiaL

  View on GitHub
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆21Aug 19, 2025Updated 5 months ago
• liusihan / population-compare-pipeline

  View on GitHub
  Analysis pipelines for QTL discovery and GWAS signals interpretation
  ☆12Sep 3, 2024Updated last year
• UMCUGenetics / PolarMorphism

  View on GitHub
  Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics
  ☆14Oct 27, 2023Updated 2 years ago
• roman-tremmel / ggfastman

  View on GitHub
  Fast manhattenplots using ggplot2
  ☆13Feb 19, 2024Updated last year
• GP2code / GP2-Multiancestry-metaGWAS

  View on GitHub
  ☆12Jun 16, 2023Updated 2 years ago
• mancusolab / FactorGo

  View on GitHub
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Jan 30, 2025Updated last year
• RitchieLab / Gene-level-statistical-colocalization

  View on GitHub
  ☆15Apr 20, 2021Updated 4 years ago
• statgen / pheweb-rg-pipeline

  View on GitHub
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Mar 22, 2019Updated 6 years ago
• jrs95 / hyprcoloc

  View on GitHub
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆55Apr 8, 2024Updated last year
• MRCIEU / GeneHackman

  View on GitHub
  Pipeline for genetic epidemiology projects at Univsersity of Bristol
  ☆15Dec 18, 2025Updated last month
• DelinLi / TWAS

  View on GitHub
  Example for TWAS
  ☆12Jan 23, 2022Updated 4 years ago
• TiffanyAmariuta / TCSC

  View on GitHub
  TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
  ☆15Oct 3, 2024Updated last year