Alternatives and similar repositories for isotwas:

Users that are interested in isotwas are comparing it to the libraries listed below

• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆33Updated 2 months ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆34Updated 5 months ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆22Updated 3 months ago
• yuanzhongshang / GIFT
  ☆18Updated 3 months ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 11 months ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆21Updated 4 months ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆28Updated 2 years ago
• jianyangqt / osca
  ☆19Updated last year
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆40Updated this week
• zhouhufeng / FAVORannotator
  ☆20Updated last year
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 3 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• cuelee / pleio
  ☆18Updated last year
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆19Updated last year
• lilab-bioinfo / xQTLbiolinks
  xQTLbiolinks: an R package for integrative analysis with xQTL data
  ☆16Updated 9 months ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 10 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 7 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 11 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 3 months ago
• hakyimlab / PredictDB_Pipeline_GTEx_v7
  PredictDB Pipeline for GTEx v7 data
  ☆17Updated 2 years ago
• EMO-Consortium / GeneticCorrelation
  ☆11Updated last year
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated 9 months ago