precimed / python_convertLinks
A collection of various utilities for GWAS summary statistics
☆32Updated last year
Alternatives and similar repositories for python_convert
Users that are interested in python_convert are comparing it to the libraries listed below
Sorting:
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆31Updated this week
- R script to make Manhattan-style plot for TWAS☆41Updated 4 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- GENI plots to visualise results from genome-wide association studies☆31Updated last year
- ☆19Updated 5 months ago
- corrplot of LDSC genetic correlation results☆56Updated 3 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆38Updated 3 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆35Updated 5 years ago
- Fine-mapping method only using summary statistics☆20Updated 9 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Updated last year
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated last year
- Colocalization analysis of genetic association signals☆53Updated 7 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 4 years ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆58Updated 4 years ago
- R package for CAUSE☆56Updated 2 years ago
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Updated 2 years ago
- GWAS for survival analysis in large cohorts☆22Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆38Updated last year
- ☆57Updated last year
- Regional association plots☆24Updated last year
- Regional association plots☆26Updated last year
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆42Updated 2 years ago
- Genetics ToolboX R package☆32Updated 5 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 7 months ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Updated 2 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆38Updated 11 months ago
- ☆23Updated last week
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Updated last year
- ☆35Updated 2 years ago