ShujiaHuang / qmplot
A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
☆45Updated last year
Alternatives and similar repositories for qmplot:
Users that are interested in qmplot are comparing it to the libraries listed below
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 9 months ago
- Enhanced version of the FastQTL QTL mapper☆65Updated 2 years ago
- Burden testing against public controls☆50Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ☆25Updated 11 months ago
- PGxPOP☆16Updated 2 years ago
- Collection of analysis tools for quantitative trait loci☆54Updated last month
- ☆26Updated 4 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated 3 weeks ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 4 months ago
- tutorial on pggb☆34Updated 3 months ago
- ☆43Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Cross-population fine-mapping☆35Updated 5 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆37Updated 5 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆29Updated 5 months ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆39Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- ☆21Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆52Updated 3 weeks ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated last month
- IDR☆31Updated 2 years ago
- ☆17Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- ☆28Updated last year
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Liftover VCF files☆18Updated 8 years ago