Code and analysis for the 1000 tools paper
☆11Nov 12, 2021Updated 4 years ago
Alternatives and similar repositories for 1000-tools-paper
Users that are interested in 1000-tools-paper are comparing it to the libraries listed below
Sorting:
- ☆15Jun 3, 2019Updated 6 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Apr 14, 2025Updated 10 months ago
- ☆16Mar 18, 2025Updated 11 months ago
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- Single cell analysis in Javascript☆22Nov 28, 2025Updated 3 months ago
- ☆19Aug 29, 2025Updated 6 months ago
- Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.☆22Sep 30, 2025Updated 5 months ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 2 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Jan 26, 2026Updated last month
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- a set of NGS pipelines☆24Feb 19, 2026Updated 2 weeks ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Feb 2, 2026Updated last month
- Table of software for the analysis of single-cell RNA-seq data.☆338Feb 26, 2026Updated last week
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Jul 13, 2023Updated 2 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Tools for doing x way meta-analysis☆12Apr 12, 2022Updated 3 years ago
- Code used to process the data of the HBCA project☆33Feb 9, 2024Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- [MIRROR] Emacs support for Snakemake☆35Feb 4, 2025Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆14Feb 4, 2026Updated last month
- A small R package to make sequencing read coverage plots in R.☆40Dec 30, 2025Updated 2 months ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆11Mar 3, 2017Updated 9 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆13Aug 2, 2022Updated 3 years ago
- ☆13Feb 2, 2026Updated last month
- ☆11Mar 12, 2024Updated last year
- Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".☆12Mar 21, 2023Updated 2 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 7 years ago
- Store collections of experimental data based on TileDB☆12Feb 23, 2026Updated last week
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- In this example, I highlight R functions and system commands that could be used to engineer efficient data science workflows.☆10Nov 9, 2018Updated 7 years ago
- R as a backend for web apps.☆10Mar 7, 2018Updated 7 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago