Full-spectrum copy number variation detection by high-throughput DNA sequencing
☆42Aug 17, 2021Updated 5 years ago
Alternatives and similar repositories for CODEX2
Users that are interested in CODEX2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A normalization and copy number variation calling procedure for whole exome DNA sequencing data.☆10Sep 29, 2019Updated 7 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- ☆57Jan 11, 2023Updated 3 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Remove primer sequence from BAM alignments by soft-clipping☆29Dec 5, 2019Updated 6 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28May 14, 2025Updated last year
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 4 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 11 months ago
- ☆18Jul 13, 2021Updated 5 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 6 months ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 5 years ago
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆83Jun 30, 2025Updated last year
- GRIMM: Graph IMputation and Matching for HLA Genotypes☆11May 24, 2023Updated 3 years ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- BreakID: genomics breakpoints identification to detect gene fusion events using discordant pairs and split read☆12Jun 17, 2020Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 4 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 5 months ago
- DNA sequencing analysis notes from Ming Tang☆150Mar 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package to create a pretty Copy Number Variant plot from a segments file☆11Feb 25, 2025Updated last year
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Nov 5, 2019Updated 6 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- A Julia package for extracting mutation signatures using topic models☆20Feb 23, 2022Updated 4 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 8 months ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 10 years ago
- visualize CNV data from targeted capture based sequencing data☆37May 10, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Variant Interpretation Pipeline☆52Updated this week
- ☆10Sep 15, 2021Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆62Jun 7, 2019Updated 7 years ago
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Oct 20, 2026Updated 2 weeks ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated 2 months ago
- CNV screening and annotation tool☆25Oct 31, 2016Updated 10 years ago
- Toolkit for single-cell copy number analysis☆37Dec 15, 2025Updated 10 months ago