saezlab / decoupler-py
Python package to perform enrichment analysis from omics data.
☆189Updated 2 months ago
Alternatives and similar repositories for decoupler-py:
Users that are interested in decoupler-py are comparing it to the libraries listed below
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆129Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆143Updated 4 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated 2 weeks ago
- R package to access DoRothEA's regulons☆143Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆199Updated 8 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆150Updated this week
- Conversion between scRNA-seq objects☆170Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆203Updated 2 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆124Updated last month
- Differential expression analysis for single-cell RNA-seq data.☆197Updated last month
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆118Updated last year
- A Bayesian model for compositional single-cell data analysis☆160Updated last year
- Clonotype Neighbor Graph Analysis☆86Updated 2 weeks ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated last week
- Detect doublets in single-cell RNA-seq data☆146Updated 4 years ago
- Scaling Single Cell Analysis to Millions of Cells☆189Updated this week
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 5 months ago
- CZ CELLxGENE Discover Census☆98Updated last week
- A tool for detecting somatic variants in single cell data☆197Updated 6 months ago
- Reference mapping for single-cell genomics☆359Updated last month
- Tabula Muris Senis☆100Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆142Updated 2 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆183Updated last month
- Batch balanced KNN☆157Updated last year
- A scanpy extension to analyse single-cell TCR and BCR data.☆229Updated this week
- Methods for detecting doublets in single-cell sequencing data☆186Updated 3 weeks ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆167Updated 8 months ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆214Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆269Updated this week