Alternatives and similar repositories for decoupler-py:

Users that are interested in decoupler-py are comparing it to the libraries listed below

• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆129Updated 2 years ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆142Updated 3 months ago
• saezlab / liana-py
  LIANA+: an all-in-one framework for cell-cell communication
  ☆196Updated last month
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆155Updated 8 months ago
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆143Updated 4 years ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆123Updated last month
• scverse / muon
  muon is a multimodal omics Python framework
  ☆229Updated 3 weeks ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆163Updated this week
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆196Updated 3 weeks ago
• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆163Updated this week
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆117Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆140Updated 2 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆142Updated last year
• icbi-lab / infercnvpy
  Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
  ☆148Updated this week
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆196Updated 7 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆158Updated last year
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆112Updated this week
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆181Updated last month
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆127Updated 4 months ago
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆226Updated this week
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆132Updated this week
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 11 months ago
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆106Updated last month
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆140Updated 3 years ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆96Updated last week
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆268Updated 2 weeks ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆185Updated this week
• Teichlab / bbknn
  Batch balanced KNN
  ☆154Updated last year
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆209Updated last month
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆345Updated 3 months ago