zktuong / dandelion
dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
☆112Updated this week
Alternatives and similar repositories for dandelion:
Users that are interested in dandelion are comparing it to the libraries listed below
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆99Updated last month
- SCSA: cell type annotation for single-cell RNA-seq data☆88Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated last year
- R package to access DoRothEA's regulons☆142Updated last year
- Clonotype Neighbor Graph Analysis☆83Updated 6 months ago
- ☆71Updated this week
- Tools for single-cell data processing☆122Updated 9 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆155Updated 8 months ago
- R package for Pathway RespOnsive GENe activity inference☆100Updated 2 years ago
- A docker image for single-cell analysis☆81Updated last month
- Conversion between scRNA-seq objects☆160Updated this week
- Analysis of cell-cell communication at single-cell resolution☆100Updated 6 months ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last year
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆63Updated 3 weeks ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆126Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆158Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆79Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- ☆104Updated this week
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Convert between AnnData and SingleCellExperiment☆131Updated this week
- R package for the analysis of single-cell immune repertoires☆42Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated last month
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆142Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆123Updated 2 weeks ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Spatial transcriptomics of heart tissue☆81Updated last year