Alternatives and similar repositories for WidefieldImager:

Users that are interested in WidefieldImager are comparing it to the libraries listed below

• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆47Updated last year
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆12Updated last week
• churchlandlab / wfield
  Tools to process widefield data
  ☆12Updated 3 years ago
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆16Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆24Updated 5 years ago
• zhoupc / OASIS_matlab
  ☆35Updated 3 years ago
• jcouto / wfield
  Tools to process widefield data
  ☆15Updated 2 months ago
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 7 years ago
• int-brain-lab / ONE
  Open Neurophysiology Environment
  ☆18Updated this week
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆59Updated 8 months ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated 11 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆71Updated 2 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆25Updated this week
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆12Updated last week
• cortex-lab / widefield
  Image processing and tools for widefield imaging
  ☆18Updated 5 years ago
• llerussell / Bruker_PrairieLink
  Stream data from PrairieView into MATLAB to allow online processing and analysis
  ☆11Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆86Updated 3 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated 2 months ago
• int-brain-lab / ibl-neuropixel
  Collection of tools to handle Neuropixel 1.0 and 2.0 data
  ☆13Updated last month
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆18Updated 7 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 7 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆16Updated this week
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆33Updated this week
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆35Updated 5 years ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆46Updated last year