churchlandlab / WidefieldImager
Pre-processing pipeline for widefield data
☆10Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for WidefieldImager
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆65Updated 2 weeks ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- Tools to process widefield data☆12Updated 3 years ago
- pipeline for volumetric cell segmentation☆11Updated this week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆83Updated last week
- pyqt5 dependent applications for IBL sessions☆25Updated last week
- Match suite2p ROIs between imaging sessions☆23Updated 5 years ago
- Control and design of two-photon photostimulation experiments☆16Updated 10 months ago
- Serial-section automated anatomy extension for ScanImage☆12Updated 2 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆29Updated 2 months ago
- miniscope analysis pipeline with interactive visualizations☆91Updated 4 months ago
- ☆33Updated 3 years ago
- Open Neurophysiology Environment☆17Updated this week
- Image processing and tools for widefield imaging☆18Updated 4 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆69Updated 2 months ago
- Fiber photometry analysis☆19Updated 3 weeks ago
- Utilities for managing Neuropixel datasets and Kilosort results☆45Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 5 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated 11 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆49Updated last month
- Registration of cells across sessions.☆70Updated 3 months ago
- ☆20Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆123Updated 3 weeks ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆54Updated 3 weeks ago
- Calcium Data Extraction and Analysis☆43Updated last year
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆18Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆24Updated 2 years ago
- Histology processing☆64Updated 8 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated 11 months ago