churchlandlab / WidefieldImager
Pre-processing pipeline for widefield data
☆10Updated 3 years ago
Related projects: ⓘ
- Tools to process widefield data☆12Updated 3 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆61Updated 3 weeks ago
- spike extraction from calcium signals (Deneux et al., 2016)☆26Updated 4 years ago
- Open Neurophysiology Environment☆16Updated this week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆41Updated last year
- Match suite2p ROIs between imaging sessions☆21Updated 5 years ago
- Control and design of two-photon photostimulation experiments☆15Updated 8 months ago
- Image processing and tools for widefield imaging☆18Updated 4 years ago
- pipeline for volumetric cell segmentation☆10Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆65Updated this week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆80Updated last month
- miniscope analysis pipeline with interactive visualizations☆91Updated 2 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆28Updated 2 months ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆12Updated 2 months ago
- pyqt5 dependent applications for IBL sessions☆23Updated 2 weeks ago
- Calcium Data Extraction and Analysis☆43Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆44Updated last year
- A MATLAB toolbox for interacting with the Allen Brain Observatory☆19Updated 4 months ago
- ☆18Updated 2 weeks ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated 6 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆96Updated 3 weeks ago
- WIP: Python port of Kilosort2☆50Updated last year
- Histology processing☆61Updated 6 months ago
- Single photon tools for Neuroscience☆35Updated 8 months ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆24Updated 3 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆24Updated 2 years ago
- Extract regions of interest based on correlated pixel intensity☆23Updated 7 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆115Updated 3 weeks ago
- motion correction☆16Updated last year
- A Matlab interface for reading and writing NWB files☆49Updated this week