churchlandlab / WidefieldImagerView external linksLinks
Pre-processing pipeline for widefield data
☆12Dec 11, 2020Updated 5 years ago
Alternatives and similar repositories for WidefieldImager
Users that are interested in WidefieldImager are comparing it to the libraries listed below
Sorting:
- Tools to process widefield data☆12Jul 20, 2021Updated 4 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- Jax implementation of normcorre☆14Jan 25, 2025Updated last year
- Tools to process widefield data☆20Aug 26, 2025Updated 5 months ago
- Pytorch implementation of LocaNMF☆36Feb 17, 2020Updated 6 years ago
- Image processing and tools for widefield imaging☆19Dec 7, 2019Updated 6 years ago
- Region Of Interest Classification and Tracking☆27Feb 5, 2026Updated last week
- Main repository for IBL rig code☆22Updated this week
- Open Neurophysiology Environment☆21Feb 5, 2026Updated last week
- motion correction☆17Jan 27, 2023Updated 3 years ago
- HiLo microscopy reconstruction with NLM denoising☆10Jan 28, 2025Updated last year
- Measure PSF FWHM along different axes☆37Feb 9, 2026Updated last week
- Open source software for multi-modal optical molecular imaging☆11May 19, 2022Updated 3 years ago
- NeuroMaC: simulator of the development of Neuronal Morphologies & Circuits☆11Aug 29, 2017Updated 8 years ago
- A mouse brain histology tool for neuroscientists.☆13Dec 11, 2024Updated last year
- Open source smFRET confocal microscope☆11Jul 21, 2021Updated 4 years ago
- Scripts and functions to calculate and investigate Granger causality in neuroscience☆11Mar 11, 2021Updated 4 years ago
- A collection of compiled LCModel binaries for various operating systems.☆13Dec 3, 2025Updated 2 months ago
- Everything needed to replicate the figures from the paper "Engineering recurrent neural networks from task-relevant manifolds and dynamic…☆12Dec 5, 2019Updated 6 years ago
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated last year
- Define and generate waveforms to output with your favorite DAC☆12Jan 2, 2019Updated 7 years ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆13Dec 5, 2025Updated 2 months ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Mar 7, 2025Updated 11 months ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Sep 27, 2019Updated 6 years ago
- Nature color palette optimized for color-blind individuals☆17Aug 13, 2023Updated 2 years ago
- Design and documentation for the 2p microscope.☆16Feb 20, 2025Updated 11 months ago
- Julia package for the Napari multi-dimensional image viewer☆11Jun 21, 2022Updated 3 years ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- MATLAB colormaps for scientific data representation☆14Jan 9, 2025Updated last year
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 3 years ago
- Arduino menu library for LCD displays 16x2 and 20x4☆12Sep 9, 2021Updated 4 years ago
- ☆12Oct 19, 2023Updated 2 years ago
- Micro-Manager Open Source Microscopy Software (http://valelab.ucsf.edu/~MM/MMwiki/). SVN-tracking Git repository☆15Jul 14, 2016Updated 9 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- ☆12Aug 25, 2021Updated 4 years ago
- MBIRJAX is a Python package for Model Based Iterative Reconstruction (MBIR) of images from tomographic data.☆19Updated this week
- Software for universal camera control and frames acquisition☆19Feb 6, 2023Updated 3 years ago