churchlandlab / WidefieldImagerLinks
Pre-processing pipeline for widefield data
☆11Updated 4 years ago
Alternatives and similar repositories for WidefieldImager
Users that are interested in WidefieldImager are comparing it to the libraries listed below
Sorting:
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆95Updated 10 months ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆38Updated last month
- Serial-section automated anatomy extension for ScanImage☆16Updated last month
- Registration of cells across sessions.☆75Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 5 months ago
- Control and design of two-photon photostimulation experiments☆17Updated last year
- Histology processing☆69Updated last week
- pyqt5 dependent applications for IBL sessions☆29Updated 3 weeks ago
- A curated list of awesome Neuropixels resources.☆111Updated this week
- Tools to work with Allen Inst CCF data in matlab☆140Updated 2 months ago
- pipeline for volumetric cell segmentation☆13Updated 2 weeks ago
- Utilities for managing Neuropixel datasets and Kilosort results☆48Updated 4 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆131Updated 2 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- ☆23Updated this week
- Tools to process widefield data☆17Updated 3 weeks ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆62Updated 2 months ago
- Python package to handle probe layout, geometry and wiring to device.☆72Updated this week
- SpikeGLX recording system GUI [Neuropixels NI]☆96Updated this week
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated this week
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆17Updated last month
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆29Updated last month
- Parameter-free statistical testing package☆11Updated 5 months ago
- ☆52Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆77Updated 9 months ago