Alternatives and similar repositories for WidefieldImager

Users that are interested in WidefieldImager are comparing it to the libraries listed below

• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆97Updated 11 months ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆40Updated this week
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆16Updated 2 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆80Updated 10 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆69Updated last month
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• int-brain-lab / ibl-neuropixel
  Collection of tools to handle Neuropixel 1.0 and 2.0 data
  ☆17Updated 3 weeks ago
• petersaj / AP_histology
  Histology processing
  ☆70Updated last month
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆13Updated 3 weeks ago
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆17Updated last year
• gardner-lab / FinchScope
  Single photon tools for Neuroscience
  ☆36Updated last year
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆60Updated 2 weeks ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆29Updated last week
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆62Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated this week
• churchlandlab / wfield
  Tools to process widefield data
  ☆12Updated 4 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆142Updated 3 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆77Updated 6 months ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆128Updated 2 years ago
• mdhumphries / SpikeTrainCommunitiesToolBox
  MATLAB toolbox for spike-train community detection
  ☆15Updated last year
• Whitlock-Group / HERBS
  ☆52Updated last year
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆16Updated 2 weeks ago
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆49Updated 5 months ago