AllenInstitute / openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience ππ§ π¬π₯οΈπ
β66Updated 2 weeks ago
Alternatives and similar repositories for openscope_databook:
Users that are interested in openscope_databook are comparing it to the libraries listed below
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSFβ97Updated this week
- NEural MOdelS, a statistical modeling framework for neuroscience.β95Updated last week
- "Approaches to Study Neural Circuits" courseβ65Updated 4 months ago
- β51Updated 7 months ago
- Library to perform Slice Tensor Component Analysis (sliceTCA)β50Updated last month
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.β56Updated this week
- Histology processingβ65Updated this week
- This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-lineaβ¦β22Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.β60Updated last year
- pynapple collaborative data analysis (high level python scripts)β37Updated last year
- IaC codebase for the NeuroCAAS Platformβ37Updated last year
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two daysβ57Updated 3 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlasβ73Updated last week
- A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and diβ¦β25Updated last year
- Neuroelectrophysiology object model and data analysis in Python.β51Updated last month
- Browser-based NWB visualization and DANDI explorationβ55Updated last week
- β50Updated 2 years ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)β45Updated 5 years ago
- State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless dataβ48Updated 7 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of aβ¦β120Updated 2 months ago
- β23Updated 5 years ago
- IBL core shared librariesβ63Updated this week
- Coding exercises for Neural Data Science at CSHL in 2019β28Updated 4 years ago
- WIP: Python port of Kilosort2β50Updated last year
- Web app for viewing results of ephys spike sortingβ25Updated last month
- Gallery of visualizations and analyses of the Allen Brain Observatoryβ24Updated 2 years ago
- Region Of Interest Classification and Trackingβ18Updated this week
- Algorithm for automated source extraction from 1P dataβ21Updated last year
- Notebooks from the workshop tutorial implementing and discussing a range of generative models commonly used in neuroscience.β39Updated 2 years ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cellβ¦β100Updated 4 months ago