rust-bio / hts-sys
Raw rust bindings for htslib
☆10Updated last month
Alternatives and similar repositories for hts-sys:
Users that are interested in hts-sys are comparing it to the libraries listed below
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated last month
- A high-performance BigWig and BigBed library in Rust☆73Updated this week
- bedtools-like functionality for interval sets in rust☆49Updated 4 months ago
- gia: Genomic Interval Arithmetic☆58Updated 4 months ago
- ☆22Updated last month
- Alignment-based gene expression quantification☆27Updated 7 months ago
- Fast interval intersection library☆34Updated last month
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- BUS format specification☆14Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated last week
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆11Updated 3 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated this week
- a lexicographically-based GTF/GFF sorter☆29Updated 5 months ago
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- Fast sequencing data quality metrics☆17Updated 2 weeks ago
- Convert vcf in parquet☆24Updated last month
- ☆14Updated 6 months ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 6 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 3 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- ☆57Updated 2 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆35Updated 7 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated 7 months ago
- A better, faster way to count guides in CRISPR screens.☆31Updated last month
- Builds a PEP from SRA or GEO accessions☆46Updated 4 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year