rust-bio / hts-sys
Raw rust bindings for htslib
☆9Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for hts-sys
- A high-performance BigWig and BigBed library in Rust☆71Updated last week
- bedtools-like functionality for interval sets in rust☆44Updated 3 months ago
- A rust framework to make using alevin-fry even simpler☆46Updated last month
- ☆15Updated 9 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆94Updated 5 months ago
- A better, faster way to count guides in CRISPR screens.☆28Updated last month
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆14Updated last month
- Container class to represent genomic locations and support genomic analysis☆17Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆57Updated 3 months ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆28Updated this week
- Convert vcf in parquet☆22Updated 4 months ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 3 years ago
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- Deep learning-based structural variant filtering method☆35Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆27Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- a minimal, scriptable genome browser for python☆48Updated 7 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆29Updated 6 months ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques.☆26Updated last month
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- Fast sequencing data quality metrics☆17Updated this week
- VDJ Clonotyping & Analysis Tools☆47Updated 2 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆42Updated last year
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆11Updated last month
- Builds a PEP from SRA or GEO accessions☆46Updated 2 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- an API for intersections of genomic data☆74Updated this week
- UMCU Genetics Nextflow modules☆26Updated 3 weeks ago