Convert vcf in parquet
☆30Jan 23, 2025Updated last year
Alternatives and similar repositories for vcf2parquet
Users that are interested in vcf2parquet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 2 months ago
- DuckDB Extension for working with bioinformatic data.☆19Oct 18, 2023Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 7 months ago
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last month
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- an API for intersections of genomic data☆147Mar 12, 2026Updated 2 weeks ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆15Mar 20, 2026Updated last week
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆195Mar 10, 2025Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Mar 26, 2025Updated last year
- vembrane filters VCF records using python expressions☆69Mar 17, 2026Updated last week
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Grep for FASTQ files☆104Dec 17, 2025Updated 3 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- A high-performance BigWig and BigBed library in Rust☆111Feb 13, 2026Updated last month
- High performance WebGL genome visualization☆15Oct 22, 2021Updated 4 years ago
- implicit pangenome graph☆98Updated this week
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆50Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 10 months ago
- ☆14Oct 14, 2020Updated 5 years ago
- Fast sequencing data quality metrics☆32Sep 10, 2025Updated 6 months ago
- A data manipulation tool for parquet, csv, and json data.☆44Mar 7, 2025Updated last year
- A very fast interval tree data structure☆131Feb 3, 2025Updated last year
- ☆21Dec 26, 2025Updated 3 months ago
- expressions on VCFs☆91Mar 17, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Jan 9, 2026Updated 2 months ago
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆141Updated this week
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Mar 16, 2026Updated last week
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 3 months ago