Alternatives and similar repositories for vcf2parquet

Users that are interested in vcf2parquet are comparing it to the libraries listed below

• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 4 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆24Updated last week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆66Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 5 months ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last year
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆10Updated last month
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 2 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Updated 7 months ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆27Updated last month
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last month
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆27Updated last year
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 2 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆89Updated 9 months ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆31Updated 3 weeks ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆37Updated 9 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆37Updated 7 months ago
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆25Updated 4 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 8 months ago
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆73Updated 5 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 4 months ago
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• cschin / multi-tabix
  multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
  ☆10Updated 4 years ago
• flalom / vcf-reformatter
  🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …
  ☆44Updated 5 months ago
• nh13 / fqme
  ☆21Updated last month
• wdecoster / kyber
  ☆21Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆29Updated 6 months ago