fulcrumgenomics / python-snakemake-templateLinks
A template repository for Snakemake pipepline(s) and a python command-line toolkit.
☆28Updated last month
Alternatives and similar repositories for python-snakemake-template
Users that are interested in python-snakemake-template are comparing it to the libraries listed below
Sorting:
- ☆22Updated 6 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- A program for the analysis of single cell nanopore long read data☆19Updated last week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 2 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- interactive plots for differential expression analysis☆32Updated last week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated last week
- A VSCode extension pack for nf-core developers.☆15Updated 3 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆23Updated 4 years ago
- ☆26Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Fast sequencing data quality metrics☆26Updated 3 weeks ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated this week
- Genomic data interpretation and visualization Workshop☆20Updated 3 weeks ago
- ☆28Updated 6 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Nascent Transcription Processing Pipeline☆19Updated 3 weeks ago