Alternatives and similar repositories for DeepType

Users that are interested in DeepType are comparing it to the libraries listed below

• cantinilab / momix-notebook
  ☆66Updated last year
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆120Updated 6 years ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 4 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 5 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆95Updated 4 years ago
• mematt / ml4calibrated450k
  This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…
  ☆23Updated 3 years ago
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 3 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• Vivianstats / scImpute
  Accurate and robust imputation of scRNA-seq data
  ☆97Updated 6 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated last year
• KrishnaswamyLab / SAUCIE
  ☆100Updated last year
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆35Updated 3 years ago
• maxconway / SNFtool
  Similarity Network Fusion
  ☆34Updated 10 years ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• PMBio / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆37Updated 8 years ago
• lmweber / deconvolution-papers
  List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures
  ☆19Updated 5 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆41Updated last year
• BatzoglouLabSU / SIMLR
  Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…
  ☆113Updated this week
• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆28Updated 6 months ago
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆22Updated 3 years ago
• eleozzr / desc
  Deep Embedding for Single-cell Clustering
  ☆88Updated last year
• MarioniLab / MNN2017
  Code for the MNN manuscript figures
  ☆49Updated 7 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• shawnstat / EDGE
  EDGE
  ☆15Updated 5 years ago
• daifengwanglab / scGRNom
  ☆11Updated 4 years ago
• saorisakaue / GREP
  GREP: Genome for REPositioning drugs
  ☆43Updated 2 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆27Updated 10 months ago
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆18Updated 11 months ago