CNRGH / crimmixLinks
☆17Updated 6 years ago
Alternatives and similar repositories for crimmix
Users that are interested in crimmix are comparing it to the libraries listed below
Sorting:
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- Code to reproduce TNBC analysis and figures☆25Updated 3 years ago
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆27Updated 5 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- ☆33Updated 4 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 11 months ago
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Updated 3 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Updated 3 years ago
- ☆61Updated last year
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- ☆20Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- ☆48Updated last year
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last month
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Updated 4 years ago
- Tumor Immune Single-cell Hub☆21Updated 5 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆45Updated 3 years ago
- ☆43Updated 3 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated last year
- ☆17Updated 2 years ago