Alternatives and similar repositories for momix-notebook

Users that are interested in momix-notebook are comparing it to the libraries listed below

• klarman-cell-observatory / scPhere
  ☆102Updated 2 years ago
• xuyungang / scIGANs
  Generative adversarial networks for single-cell RNA-seq imputation
  ☆39Updated 5 years ago
• eleozzr / desc
  Deep Embedding for Single-cell Clustering
  ☆88Updated last year
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 3 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆88Updated 11 months ago
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆82Updated 11 months ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆79Updated 5 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆95Updated 4 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆110Updated last year
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆104Updated last year
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆120Updated 6 years ago
• KrishnaswamyLab / SAUCIE
  ☆100Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆71Updated 5 years ago
• jianhuupenn / ItClust
  Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
  ☆55Updated 4 months ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆135Updated last year
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆57Updated 6 years ago
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆103Updated 2 years ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆142Updated 2 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆63Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆56Updated 3 months ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 4 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆57Updated 4 months ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆172Updated 2 years ago