Alternatives and similar repositories for alzheimers_parkinsons:

Users that are interested in alzheimers_parkinsons are comparing it to the libraries listed below

• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆52Updated 2 years ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆74Updated last year
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 3 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆44Updated 2 months ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆30Updated last year
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆22Updated 3 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 5 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆56Updated 2 years ago
• powellgenomicslab / scPred
  scPred package for cell type prediction from scRNA-seq data
  ☆86Updated last year
• douglasyao / FR-Perturb
  Factorize-Recover for Perturb-seq analysis (FR-Perturb)
  ☆20Updated 3 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆64Updated this week
• BIMSBbioinfo / ikarus
  Identifying tumor cells at the single-cell level using machine learning
  ☆47Updated 4 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆50Updated 2 years ago
• Michorlab / tnbc_scrnaseq
  ☆40Updated 6 years ago
• bei-lab / scRNA-AHCA
  Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
  ☆39Updated last year
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆56Updated 3 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆68Updated last month
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆56Updated last month
• cellgeni / batchbench
  ☆46Updated 2 years ago
• perslab / CELLEX
  CELLEX (CELL-type EXpression-specificity)
  ☆39Updated last year
• dtsoucas / DWLS
  Gene expression deconvolution using dampened weighted least squares
  ☆25Updated 4 years ago
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆34Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆38Updated 2 months ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 2 months ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆121Updated 4 months ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆57Updated 2 years ago
• yal054 / epiformer
  ☆25Updated 9 months ago
• lhqing / mouse_brain_2020
  Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"
  ☆12Updated 4 years ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago