Alternatives and similar repositories for alzheimers_parkinsons

Users that are interested in alzheimers_parkinsons are comparing it to the libraries listed below

• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆54Updated 2 years ago
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆34Updated 2 years ago
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 2 months ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆74Updated last year
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆57Updated 3 months ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆45Updated 4 months ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 3 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated last month
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆71Updated 3 months ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆58Updated 4 years ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆62Updated 3 months ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆59Updated last year
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆127Updated 7 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 7 months ago
• perslab / CELLEX
  CELLEX (CELL-type EXpression-specificity)
  ☆41Updated last year
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆58Updated 2 years ago
• xleizi / easySCF
  ☆40Updated 5 months ago
• Danko-Lab / TED
  a fully Bayesian approach to deconvolve tumor microenvironment
  ☆60Updated 2 years ago
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated 5 months ago
• yal054 / epiformer
  ☆26Updated last month
• BIMSBbioinfo / ikarus
  Identifying tumor cells at the single-cell level using machine learning
  ☆48Updated 6 months ago
• ShobiStassen / VIA
  trajectory inference
  ☆98Updated 3 months ago
• cole-trapnell-lab / cicero-release
  ☆59Updated 8 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆51Updated 2 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆74Updated 3 weeks ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆74Updated 4 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆49Updated last year
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆117Updated 8 months ago
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆81Updated 9 months ago