kundajelab / alzheimers_parkinsonsLinks
Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
☆46Updated 5 years ago
Alternatives and similar repositories for alzheimers_parkinsons
Users that are interested in alzheimers_parkinsons are comparing it to the libraries listed below
Sorting:
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated last week
- ☆65Updated 2 years ago
- ☆47Updated 3 years ago
- scWGCNA☆61Updated 2 years ago
- ☆40Updated 7 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- Repository for Cibersortx☆60Updated 4 years ago
- ☆27Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- Tools used in Human Cell Landscape(HCL)☆55Updated 5 years ago
- ☆60Updated 4 years ago
- ☆95Updated 4 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 3 months ago
- ☆43Updated 4 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- ☆53Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- Single-Cell Clustering Assessment Framework☆105Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago