Alternatives and similar repositories for GREP

Users that are interested in GREP are comparing it to the libraries listed below

• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆59Updated last year
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆50Updated 7 months ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆60Updated last week
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆34Updated 3 months ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• FinucaneLab / pops
  ☆85Updated 3 months ago
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆90Updated last year
• eleporcu / TWMR
  ☆23Updated 6 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated 3 weeks ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆91Updated 11 months ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• hakyimlab / scPrediXcan
  ☆32Updated 4 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆58Updated last week
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆62Updated last year
• perslab / CELLEX
  CELLEX (CELL-type EXpression-specificity)
  ☆43Updated 2 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆72Updated 4 years ago
• bsml320 / deTS
  deTS
  ☆18Updated 5 years ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated 6 months ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 5 years ago
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆173Updated 3 months ago
• clagiamba / moloc
  ☆37Updated 4 years ago
• Joker-Jerome / UTMOST
  UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…
  ☆41Updated last week
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆56Updated last year
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆60Updated 4 years ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆113Updated 3 years ago
• gamazonlab / MR-JTI
  ☆57Updated 9 months ago
• Kyoko-wtnb / FUMA-circos-plot
  Configs and descriptions of circos plots created on FUMA web application
  ☆15Updated 7 years ago