NCICCGPO / gdan-tmp-modelsLinks
Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
☆24Updated 2 months ago
Alternatives and similar repositories for gdan-tmp-models
Users that are interested in gdan-tmp-models are comparing it to the libraries listed below
Sorting:
- Scripts from the GBM cellular states paper☆18Updated 4 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- ☆20Updated 2 years ago
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆19Updated 5 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆20Updated 3 weeks ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 2 months ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 8 months ago
- ☆18Updated 3 months ago
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆14Updated 2 years ago
- ☆16Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆56Updated last year
- ☆26Updated 3 years ago
- ☆16Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- CDSeq R Package☆20Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆11Updated last year
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 3 years ago
- ☆18Updated 2 months ago
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆15Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 2 years ago
- ☆12Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- Computational pipeline to process EasySci-RNA data.☆20Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 2 weeks ago
- development of network co-localization tool☆14Updated 8 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 8 months ago
- UHCA☆11Updated 5 months ago