Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
☆36Apr 9, 2025Updated last year
Alternatives and similar repositories for gdan-tmp-models
Users that are interested in gdan-tmp-models are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Aug 20, 2024Updated last year
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆50Mar 24, 2026Updated 2 months ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 11 months ago
- ☆22Mar 6, 2023Updated 3 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16May 21, 2024Updated 2 years ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 5 years ago
- code and data for Liu, Schilling, et al Nat Med 2019☆18Aug 1, 2024Updated last year
- Workflows for health technology Assessments in R using Discrete EveNts☆12May 28, 2026Updated 2 weeks ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆21May 17, 2025Updated last year
- ☆63Dec 27, 2023Updated 2 years ago
- machine-readable information for the TCGA dataset, mirrored from other sources☆23Jun 14, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- InstaPrism is an R package for fast implementation of BayesPrism☆56Jun 3, 2024Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆19Jan 18, 2026Updated 4 months ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆31Dec 6, 2024Updated last year
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆23Apr 10, 2025Updated last year
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆25Jun 28, 2024Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆50Nov 10, 2023Updated 2 years ago
- Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal can…☆132May 30, 2025Updated last year
- RITE Dos (Radiotherapy In vivo Two-Dimensional EPID Dosimetry) is MATLAB software package that does just that, provides in vivo dosimetry…☆12Feb 15, 2018Updated 8 years ago
- coding exercise using TCGA immune infiltration data☆46Feb 2, 2024Updated 2 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆62Jul 22, 2024Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24May 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆58Aug 6, 2025Updated 10 months ago
- ☆21Dec 23, 2024Updated last year
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Dec 15, 2022Updated 3 years ago
- Code for aging project☆61Mar 20, 2026Updated 2 months ago
- ☆25Aug 1, 2022Updated 3 years ago
- Hungarian tokenizer.☆14Mar 15, 2022Updated 4 years ago