Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
☆37Apr 9, 2025Updated last year
Alternatives and similar repositories for gdan-tmp-models
Users that are interested in gdan-tmp-models are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Segmentation-free Analysis of In Situ Capture data☆14Jul 6, 2026Updated last month
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆55Oct 31, 2024Updated last year
- ☆22Aug 20, 2024Updated 2 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆54Mar 24, 2026Updated 5 months ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- ☆37Jan 3, 2025Updated last year
- code and data for Liu, Schilling, et al Nat Med 2019☆18Aug 1, 2024Updated 2 years ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 4 years ago
- ☆16Oct 16, 2025Updated 10 months ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- OncoNetExplainer: Explainable Prediction of Cancer Types Based on Gene Expression Data☆11Feb 28, 2023Updated 3 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- machine-readable information for the TCGA dataset, mirrored from other sources☆23Jun 14, 2022Updated 4 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Jun 17, 2026Updated 2 months ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 7 months ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- ☆90Jun 29, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🧬Genomes to proteins, multi-level visualization library☆17May 22, 2026Updated 3 months ago
- Easy and Efficient Batch Processing of Regression Models in R☆15Aug 1, 2026Updated last month
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆138Sep 6, 2024Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- ☆52Feb 16, 2022Updated 4 years ago
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- UHCA☆11Jan 23, 2025Updated last year
- InstaPrism is an R package for fast implementation of BayesPrism☆59Jun 3, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆17Jun 25, 2025Updated last year
- Workflows for health technology Assessments in R using Discrete EveNts☆13Jul 24, 2026Updated last month
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- ☆17Dec 3, 2025Updated 9 months ago
- expressions on VCFs☆93Mar 17, 2026Updated 5 months ago
- ☆39Aug 7, 2026Updated 3 weeks ago
- ☆18May 21, 2024Updated 2 years ago