Alternatives and similar repositories for gdan-tmp-models

Users that are interested in gdan-tmp-models are comparing it to the libraries listed below

• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆42Updated last week
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆19Updated 4 years ago
• walsh-quail-labs / IMC_Brain
  ☆20Updated 2 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆28Updated 5 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆35Updated 2 years ago
• satijalab / Mixscale
  ☆19Updated 2 months ago
• shenglinmei / ProstateCancerAnalysis
  ☆18Updated 4 months ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆26Updated 7 months ago
• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆39Updated last month
• shahcompbio / spectrum-tme
  Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
  ☆22Updated 2 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• jbergenstrahle / STUtility
  ☆52Updated 2 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 6 months ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 3 months ago
• xushiabbvie / TDtool
  ☆10Updated 9 months ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆27Updated last week
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 3 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• McGranahanLab / ImmuneLENS
  ☆14Updated 4 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• Winnie09 / Lamian
  ☆55Updated 11 months ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated 2 years ago