compgenome365 / TCGA-Assembler-2Links
TCGA-Assembler 2
☆76Updated 7 years ago
Alternatives and similar repositories for TCGA-Assembler-2
Users that are interested in TCGA-Assembler-2 are comparing it to the libraries listed below
Sorting:
- ☆61Updated 4 years ago
- ☆30Updated 3 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆93Updated 8 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆59Updated last year
- Scripts to analyze TCGA data☆120Updated last year
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- Tools for manipulating annotated data matrices☆92Updated 3 years ago
- ☆58Updated 2 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 2 weeks ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- ☆69Updated last year
- ☆62Updated 4 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 5 months ago
- R package for Pathway RespOnsive GENe activity inference☆105Updated 2 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆96Updated 3 years ago
- ☆80Updated last year
- Immunology-related bioinformatics data and tools☆73Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- Multiscale embedded gene co-expression network analysis☆51Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆45Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆71Updated 6 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆148Updated 3 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated last year
- ☆59Updated 5 years ago
- Tools used in Human Cell Landscape(HCL)☆54Updated 4 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆82Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- A docker image for single-cell analysis☆88Updated 4 months ago