TCGA-Assembler 2
☆77Jun 4, 2018Updated 8 years ago
Alternatives and similar repositories for TCGA-Assembler-2
Users that are interested in TCGA-Assembler-2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Feb 5, 2021Updated 5 years ago
- ☆10Feb 3, 2020Updated 6 years ago
- GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC☆69Sep 10, 2023Updated 3 years ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆37May 18, 2020Updated 6 years ago
- Pan-cancer quantitative histopathology analysis using deep learning☆12Mar 1, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 7 months ago
- ☆24Jun 27, 2017Updated 9 years ago
- This package includes a new cell reference for adult peripheral blood deconvolution arrayed using Illumina HumanMethylationEPIC☆10Sep 17, 2026Updated last month
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆53Jun 30, 2023Updated 3 years ago
- GDC Data Transfer Tool☆161Oct 30, 2026Updated last week
- Simple scVI implementation☆13Updated this week
- ☆15Jun 11, 2023Updated 3 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TCGAbiolinks☆357Oct 7, 2025Updated last year
- ☆10Sep 15, 2021Updated 5 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Oct 28, 2022Updated 4 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 5 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Python utilities for building integrated views of TCGA data.☆32Mar 25, 2018Updated 8 years ago
- ☆12Feb 10, 2023Updated 3 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆12Sep 10, 2026Updated last month
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 3 years ago
- ☆28Jan 25, 2022Updated 4 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆103Oct 4, 2024Updated 2 years ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- Python module to read binary Plink files.☆18Mar 25, 2026Updated 7 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆23Apr 30, 2026Updated 6 months ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆19Sep 30, 2026Updated last month
- ☆32Dec 6, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 7 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Nov 16, 2022Updated 3 years ago
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Aug 13, 2021Updated 5 years ago
- SAM (Significance Analysis of Microarrays) shiny app☆38Apr 3, 2022Updated 4 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆56Apr 28, 2023Updated 3 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 6 years ago