idekerlab / pyNBSLinks
Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
☆37Updated 7 months ago
Alternatives and similar repositories for pyNBS
Users that are interested in pyNBS are comparing it to the libraries listed below
Sorting:
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆37Updated 5 years ago
- ACTIONet single-cell analysis framework☆41Updated 8 months ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆53Updated 9 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆30Updated last month
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆23Updated 10 months ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆40Updated 2 months ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆24Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- GREP: Genome for REPositioning drugs☆41Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆31Updated 3 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆17Updated 3 years ago
- Explore and download data from the recount3 project☆35Updated 3 weeks ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Fast motif matching in R☆47Updated last year
- ☆13Updated 5 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆28Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- ☆25Updated 2 weeks ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 3 years ago