idekerlab / pyNBSLinks
Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
☆37Updated last year
Alternatives and similar repositories for pyNBS
Users that are interested in pyNBS are comparing it to the libraries listed below
Sorting:
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last week
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated last month
- ACTIONet single-cell analysis framework☆42Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year
- GREP: Genome for REPositioning drugs☆43Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 10 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆27Updated 5 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- SCRAT: Single-Cell Regulome Analysis Tool☆15Updated 5 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- development of network co-localization tool☆14Updated 3 months ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆61Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- ☆68Updated 5 months ago
- ☆44Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- cTPnet Package☆26Updated 3 years ago