MicrobialDarkMatter / nanomotif
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
☆23Updated last week
Related projects ⓘ
Alternatives and complementary repositories for nanomotif
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- whole genome MLST analysis☆38Updated 6 months ago
- ☆17Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆51Updated 6 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- tools for assessing the accuracy of genome assemblies☆34Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Mobile Genetic Elements Retrieving Tool☆15Updated 2 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆13Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆18Updated 6 months ago
- Recombination-free trees☆56Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆52Updated 2 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆38Updated 5 months ago
- viralFlye pipeline☆19Updated 3 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- IslandPath standalone software☆31Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 7 months ago