MicrobialDarkMatter / nanomotifLinks
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
☆34Updated last week
Alternatives and similar repositories for nanomotif
Users that are interested in nanomotif are comparing it to the libraries listed below
Sorting:
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated last week
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 7 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- SeqSero2☆39Updated 2 months ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Sorts amplicons from Nanopore sequencing data based on similarity☆40Updated 2 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Mobile Genetic Elements Retrieving Tool☆16Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Calculate confidence scores from Kraken2 output☆23Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- ☆20Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated 2 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Reorients assembled microbial sequences☆130Updated 3 months ago
- ☆36Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆71Updated 5 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last week
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last week
- Estimate metagenomic coverage and sequence diversity☆57Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆109Updated 2 months ago
- Graph-based assembly phasing☆90Updated 2 weeks ago