jaleezyy / covid-19-signal
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
☆31Updated 2 weeks ago
Alternatives and similar repositories for covid-19-signal:
Users that are interested in covid-19-signal are comparing it to the libraries listed below
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- ☆27Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Read contamination removal☆24Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆34Updated last week
- Influenza genome analysis Nextflow workflow☆24Updated 3 weeks ago
- SARS-CoV-2 workflow for nanopore sequence data☆40Updated 2 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- A set of scripts for calculating pairwise SNP distance☆38Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆27Updated last month
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Updated 5 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Intra-species bacterial contamination detection☆24Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 8 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- ☆36Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago