jaleezyy / covid-19-signal
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
☆31Updated 3 months ago
Alternatives and similar repositories for covid-19-signal:
Users that are interested in covid-19-signal are comparing it to the libraries listed below
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- ☆26Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆36Updated last week
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated 8 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- ☆52Updated 3 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 4 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Read contamination removal☆25Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆24Updated last year
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- ☆36Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated 2 months ago