jaleezyy / covid-19-signalLinks
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
☆31Updated last month
Alternatives and similar repositories for covid-19-signal
Users that are interested in covid-19-signal are comparing it to the libraries listed below
Sorting:
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆26Updated 2 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated this week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆23Updated last month
- The MLST pipeline developed by the PathOGiST research group☆36Updated last year
- Intra-species bacterial contamination detection☆25Updated 8 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆56Updated this week
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆60Updated last week
- taxonomic classifier based on the kraken2 algorithms and more☆45Updated 4 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Read contamination removal☆25Updated last year