chhylp123 / FMtreeLinks
FMtree: A fast locating algorithm of FM-indexes for genomic data
☆18Updated 7 years ago
Alternatives and similar repositories for FMtree
Users that are interested in FMtree are comparing it to the libraries listed below
Sorting:
- A fast, AVX2 and ARM Neon accelerated FM index library☆34Updated 8 months ago
- Incremental construction of FM-index for DNA sequences☆71Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Substring index for paths in a graph☆61Updated 4 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 5 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- De Bruijn graph representation in low memory☆36Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- ☆17Updated 2 years ago
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 3 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- ☆28Updated 4 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 7 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆89Updated 4 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- ☆25Updated 4 years ago
- online notebooks for a review of genome sketching☆61Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- ☆12Updated 5 years ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Updated 2 years ago