Alternatives and similar repositories for FMtree

Users that are interested in FMtree are comparing it to the libraries listed below

• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 5 years ago
• lh3 / ropebwt2
  Incremental construction of FM-index for DNA sequences
  ☆72Updated last year
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆36Updated last year
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆42Updated last month
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆53Updated last year
• VGP / vgp-tools
  ☆28Updated 9 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 3 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• dfguan / rHAT
  Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
  ☆18Updated 6 years ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated last week
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• Kmer-File-Format / kff-tools
  ☆16Updated 2 years ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆66Updated 7 years ago
• will-rowe / genome-sketching
  online notebooks for a review of genome sketching
  ☆60Updated 6 years ago
• langmead-lab / vargas
  ☆24Updated 4 months ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 9 months ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆55Updated 3 months ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆11Updated 8 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 6 months ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆34Updated 3 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 3 years ago
• jfarek / alignstats
  Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
  ☆19Updated last year
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 5 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆10Updated 4 years ago