Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Arang Rhie
☆11Mar 16, 2026Updated 7 months ago
Alternatives and similar repositories for T2T-Polish
Users that are interested in T2T-Polish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Misassembly Identifier☆29Oct 29, 2026Updated last week
- Dynamic Elongation of a Genome Assembly Path☆32Oct 26, 2026Updated last week
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated last year
- Post-verkko graph and assembly curation in Python.☆39Oct 24, 2026Updated 2 weeks ago
- ☆43Oct 6, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- ☆45Dec 29, 2025Updated 10 months ago
- ☆29May 12, 2026Updated 5 months ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- ☆33Aug 18, 2026Updated 2 months ago
- A pipeline for extracting Presence-Absence Variations (PAVs) in eukaryotic and prokaryotic genomes across multiple assemblies.☆11May 21, 2026Updated 5 months ago
- Pangenome diversity from k-mers or genes☆13Sep 22, 2026Updated last month
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- A context-based long-read simulator☆16Oct 12, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Evaluating genome assemblies☆132Updated this week
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆26Apr 25, 2024Updated 2 years ago
- Transformer-based sequence correction method for genome assembly polishing☆111Mar 11, 2025Updated last year
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated 2 months ago
- ☆14Nov 29, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Oct 23, 2024Updated 2 years ago
- ☆13May 27, 2025Updated last year
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆17Jun 20, 2025Updated last year
- 上科大刘雪松课题组基因组学分析传承与分享知识库☆16Feb 21, 2020Updated 6 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated 2 years ago
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 4 months ago
- ☆34Apr 7, 2025Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆177Sep 15, 2026Updated last month
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated 2 months ago
- Extracting paths from assembly graphs☆26Oct 29, 2026Updated last week
- ☆42May 19, 2025Updated last year