Bloom-filter based minimal perfect hash function library
☆276Jul 16, 2025Updated 8 months ago
Alternatives and similar repositories for BBHash
Users that are interested in BBHash are comparing it to the libraries listed below
Sorting:
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Self-contained, multi-threaded fasta/q parser☆48Mar 10, 2026Updated last week
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.