jaswindersingh2 / RNAsnap2Links
Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network
☆12Updated 3 years ago
Alternatives and similar repositories for RNAsnap2
Users that are interested in RNAsnap2 are comparing it to the libraries listed below
Sorting:
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆51Updated 8 months ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆32Updated 4 years ago
- ☆21Updated last year
- ☆17Updated 2 years ago
- Protein-protein interaction sites prediction through combining local and global features with deep neural networks☆54Updated 5 years ago
- Predict protein thermostability with ML☆19Updated 11 months ago
- Deep learning protein-protein binding sites prediction☆20Updated 2 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆31Updated last year
- ☆11Updated 2 years ago
- Protein language model trained on coding DNA☆48Updated 9 months ago
- ☆35Updated 2 years ago
- ☆77Updated 2 months ago
- Toolkit for structure-based deep learning on RNA.☆40Updated last week
- ☆27Updated 9 months ago
- ☆13Updated 3 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆22Updated 8 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆105Updated 2 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆23Updated last year
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆26Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆72Updated 2 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆48Updated last week
- predict stability change upon mutation☆28Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction☆61Updated 4 years ago
- This is the official repository of Prot2Token paper.☆38Updated 2 months ago
- ☆48Updated last year
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆89Updated 2 years ago
- MSA Transformer reproduction code☆84Updated 3 years ago