Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network
☆13Jun 22, 2022Updated 4 years ago
Alternatives and similar repositories for RNAsnap2
Users that are interested in RNAsnap2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆37Apr 3, 2021Updated 5 years ago
- Sum-Product Networks (SPNs) for Robust Automatic Speaker Identification.☆11Aug 30, 2020Updated 5 years ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- ☆22Jan 5, 2025Updated last year
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- pip install the deep learning & HPC starter pack to begin your project.☆12Nov 6, 2024Updated last year
- Improving Chest X-Ray Report Generation by Leveraging Warm-Starting☆79May 26, 2024Updated 2 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- CXRMate: Longitudinal Data and a Semantic Similarity Reward for Chest X-Ray Report Generation☆19Feb 20, 2025Updated last year
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24May 19, 2024Updated 2 years ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 5 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- ☆79Apr 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DeepMMSE: A Deep Learning Approach to MMSE-based Noise Power Spectral Density Estimation☆12Jun 4, 2020Updated 6 years ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated 2 years ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- Extract structural features from original PDB file☆25Jul 14, 2020Updated 6 years ago
- ☆10May 4, 2022Updated 4 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Oct 23, 2021Updated 4 years ago
- ☆29Jul 10, 2020Updated 6 years ago
- Train toy models using multi-token prediction objective☆14Apr 18, 2026Updated 3 months ago
- Sample and predict coarse grain 3D RNA structures☆10Feb 12, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Manually construct IP, TCP, UDP, and ICMP packets based on DPDK, commonly used for packet simulation, network security attack testing, fi…☆10Nov 29, 2024Updated last year
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36May 30, 2021Updated 5 years ago
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- Create force-directed graphs of RNA secondary structures.☆114Jun 6, 2020Updated 6 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Sep 13, 2020Updated 5 years ago
- MSA Transformer reproduction code☆92Oct 21, 2021Updated 4 years ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- The Eigenharp software (community)☆20Jul 20, 2026Updated 3 weeks ago
- OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks☆10Jul 9, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- Code to build models that effectively predict promoter-driven gene expression☆12May 15, 2025Updated last year
- [INFFUS 2024] Adaptive Pixel Aggregation for Joint Spatial and Angular Super-Resolution of Light Field Images☆10Sep 12, 2024Updated last year
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- Grid Generation☆11Mar 7, 2024Updated 2 years ago
- ☆12Jul 15, 2026Updated last month
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆36May 24, 2024Updated 2 years ago