BrooksResearchGroup-UM / PEVAE_Paper
Deciphering protein evolution and fitness landscapes with latent space models
☆32Updated 3 years ago
Alternatives and similar repositories for PEVAE_Paper
Users that are interested in PEVAE_Paper are comparing it to the libraries listed below
Sorting:
- ☆62Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆65Updated 7 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated this week
- A domain parser for Alphafold models☆36Updated last year
- ☆38Updated 7 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆84Updated last year
- ☆68Updated 7 months ago
- ☆49Updated last month
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆19Updated last year
- ☆28Updated 11 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆14Updated 4 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated last month
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆46Updated last month
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated 5 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆52Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆66Updated 8 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆44Updated 4 months ago
- Machine learning prediction of enzyme optimum pH☆38Updated 2 weeks ago
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆17Updated 6 months ago
- ☆35Updated last year
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆17Updated 6 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆93Updated last month
- ☆36Updated 4 months ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆24Updated 2 months ago
- PyDock Tutorial☆32Updated 6 years ago
- ☆63Updated 7 months ago