Deciphering protein evolution and fitness landscapes with latent space models
☆38Nov 2, 2021Updated 4 years ago
Alternatives and similar repositories for PEVAE_Paper
Users that are interested in PEVAE_Paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyTorch Implementation of DeepSequence☆12Aug 13, 2019Updated 7 years ago
- Pseudo Likelihood Maximization for protein in Julia☆52May 15, 2025Updated last year
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆20Jan 5, 2018Updated 8 years ago
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 8 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Automated construction of protein chimeras and their analysis.☆15Sep 29, 2023Updated 3 years ago
- ☆20Feb 25, 2025Updated last year
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆16Jan 23, 2026Updated 9 months ago
- pdbTool: An object-oriented Julia tool to parse PDB files and work with them☆17Jan 24, 2021Updated 5 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆315Apr 20, 2026Updated 6 months ago
- Boltzmann machine learning for Potts models of biological data☆13Jul 24, 2024Updated 2 years ago
- ☆20Jul 16, 2021Updated 5 years ago
- Funnel maker is a set of scripts that sets up funnel metadynamics simulations for protein-ligand binding with PLUMED and OpenMM.☆15Jan 3, 2026Updated 9 months ago
- ☆61Nov 21, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jun 26, 2018Updated 8 years ago
- Neural networks for deep mutational scanning data☆75May 30, 2025Updated last year
- Entropy from PDB conformational ensembles☆13Mar 28, 2024Updated 2 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆14Dec 7, 2021Updated 4 years ago
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆26Oct 18, 2019Updated 7 years ago
- ☆12Mar 12, 2026Updated 7 months ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- ☆10Jul 24, 2022Updated 4 years ago
- Scripts to interface TorchANI NNP with NAMD☆33Apr 28, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A program fror inter-protein contact prediction from structures of interacting proteins☆22Jun 1, 2024Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆138Nov 17, 2021Updated 4 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆24Jan 27, 2022Updated 4 years ago
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Oct 6, 2022Updated 4 years ago
- ☆13Sep 29, 2023Updated 3 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Jul 20, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A generative latent variable model for biological sequence families.☆258Mar 15, 2022Updated 4 years ago
- Feynman-Kac steering for controllable protein diffusion☆39Aug 16, 2026Updated 2 months ago
- ☆110Mar 7, 2022Updated 4 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 11 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.☆28Oct 1, 2020Updated 6 years ago
- ☆11Apr 25, 2021Updated 5 years ago