BrooksResearchGroup-UM / PEVAE_Paper

Related projects ⓘ

Alternatives and complementary repositories for PEVAE_Paper

• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆56Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆45Updated 5 months ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis and allostery from deep mutational scan…
  ☆40Updated last week
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆32Updated 11 months ago
• robpearc / DeepFoldRNA
  ☆29Updated 11 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆43Updated last week
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆41Updated 5 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆30Updated 2 years ago
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆21Updated last year
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆26Updated 3 weeks ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆25Updated this week
• Fleishman-Lab / CUMAb
  ☆19Updated 5 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆47Updated 7 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆47Updated last year
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆26Updated 4 years ago
• sokrypton / map_align
  Contact map alignment
  ☆39Updated 3 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆24Updated last year
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆78Updated 8 months ago
• Kuhlman-Lab / evopro
  ☆70Updated 7 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆23Updated 3 weeks ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆64Updated 2 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆48Updated 3 months ago
• hefeda / PGP
  ☆36Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆93Updated 9 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆33Updated 4 years ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆49Updated last month