BrooksResearchGroup-UM / PEVAE_PaperLinks
Deciphering protein evolution and fitness landscapes with latent space models
☆32Updated 3 years ago
Alternatives and similar repositories for PEVAE_Paper
Users that are interested in PEVAE_Paper are comparing it to the libraries listed below
Sorting:
- ☆64Updated 3 years ago
- ☆49Updated 3 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- A domain parser for Alphafold models☆38Updated last year
- ☆30Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- Direct coupling analysis software for protein and RNA sequences☆50Updated last month
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 3 weeks ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- ☆40Updated 9 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆47Updated 2 months ago
- Machine learning prediction of enzyme optimum pH☆44Updated last month
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated last month
- ☆41Updated 5 months ago
- Contact map alignment☆41Updated 4 years ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆15Updated 5 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- ☆68Updated 9 months ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 6 months ago
- ☆19Updated 8 months ago
- ☆35Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆56Updated 6 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆57Updated last year
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆59Updated 2 months ago
- ☆58Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- PyDock Tutorial☆32Updated 6 years ago
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆18Updated 7 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆66Updated 10 months ago