Alternatives and similar repositories for MSAGPT

Users that are interested in MSAGPT are comparing it to the libraries listed below

• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 3 months ago
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆131Updated 3 months ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated 2 months ago
• zhengkangjie / ESM-AA
  ☆76Updated 6 months ago
• lezhang7 / MSAGen
  [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction
  ☆33Updated 5 months ago
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated 11 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆91Updated 7 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆118Updated 6 months ago
• BytedProtein / ByProt
  ☆199Updated 11 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆78Updated this week
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆109Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 8 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆65Updated 2 weeks ago
• KyGao / ABGNN
  PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
  ☆53Updated last year
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆64Updated 3 years ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆91Updated last week
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆38Updated 2 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated 10 months ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆118Updated this week
• zhanghaicang / carbonmatrix_public
  ☆115Updated 2 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆117Updated 5 months ago
• Liuxg16 / GeoPPI
  ☆86Updated 2 years ago
• levinthal / Pallatom
  ☆109Updated 2 months ago
• bzho3923 / ProtLGN
  ☆31Updated last year
• programmablebio / ptm-mamba
  ☆79Updated 3 months ago
• GENTEL-lab / AuroBind
  ☆28Updated this week
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆37Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆110Updated 5 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆93Updated 8 months ago