THUDM / MSAGPT
MSAGPT
☆31Updated 5 months ago
Alternatives and similar repositories for MSAGPT:
Users that are interested in MSAGPT are comparing it to the libraries listed below
- The first large protein language model trained follows structure instructions.☆79Updated 10 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆64Updated 6 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆75Updated 3 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆64Updated this week
- ☆68Updated 2 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆104Updated 2 months ago
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆112Updated 2 months ago
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆32Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆92Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 10 months ago
- Official repository of ReactZyme☆30Updated 6 months ago
- Official repository of EnzymeFlow☆86Updated 4 months ago
- ☆30Updated 8 months ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆50Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆35Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆45Updated last year
- ☆26Updated last month
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated this week
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆82Updated 11 months ago
- ☆36Updated 2 weeks ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆54Updated last week
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆62Updated 2 months ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆91Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆31Updated 4 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆30Updated 3 months ago
- Official implementation of "Learning the language of protein structures"☆28Updated 4 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆112Updated last month
- ☆86Updated 2 years ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆57Updated 2 months ago