lucidrains / tranception-pytorch
Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction
☆31Updated 2 years ago
Alternatives and similar repositories for tranception-pytorch:
Users that are interested in tranception-pytorch are comparing it to the libraries listed below
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆56Updated 2 years ago
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆29Updated 3 years ago
- pytorch implementation of trDesign☆45Updated 3 years ago
- ☆33Updated 3 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆72Updated 3 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 2 years ago
- To be a next-generation DL-based phenotype prediction from genome mutations.☆19Updated 3 years ago
- ☆10Updated 3 years ago
- Unofficially Implements https://arxiv.org/abs/2112.05682 to get Linear Memory Cost on Attention for PyTorch☆12Updated 3 years ago
- Pytorch implementation of a simple way to enable (Stochastic) Frame Averaging for any network☆49Updated 6 months ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 4 years ago
- Implementation of an Attention layer where each head can attend to more than just one token, using coordinate descent to pick topk☆46Updated last year
- Implementation of Insertion-deletion Denoising Diffusion Probabilistic Models☆30Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- A simple Transformer where the softmax has been replaced with normalization☆19Updated 4 years ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆50Updated last year
- A simple implementation of a deep linear Pytorch module☆19Updated 4 years ago
- Implementation of Token Shift GPT - An autoregressive model that solely relies on shifting the sequence space for mixing☆48Updated 3 years ago
- Implementation of Lie Transformer, Equivariant Self-Attention, in Pytorch☆88Updated 3 years ago
- ☆21Updated last year
- Implementation of "compositional attention" from MILA, a multi-head attention variant that is reframed as a two-step attention process wi…☆50Updated 2 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆110Updated 3 years ago
- Implementation of the Kalman Filtering Attention proposed in "Kalman Filtering Attention for User Behavior Modeling in CTR Prediction"☆57Updated last year
- A python library for highly configurable transformers - easing model architecture search and experimentation.☆49Updated 3 years ago
- An implementation of (Induced) Set Attention Block, from the Set Transformers paper☆56Updated 2 years ago
- Implementation of a Transformer using ReLA (Rectified Linear Attention) from https://arxiv.org/abs/2104.07012☆49Updated 2 years ago
- A JAX nn library☆21Updated 11 months ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆57Updated 2 years ago
- ☆96Updated 9 months ago
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆52Updated last year