Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction
☆32Jun 19, 2022Updated 3 years ago
Alternatives and similar repositories for tranception-pytorch
Users that are interested in tranception-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of Insertion-deletion Denoising Diffusion Probabilistic Models☆30May 31, 2022Updated 4 years ago
- The correct way to resize images or tensors. For Numpy or Pytorch (differentiable).☆18May 5, 2022Updated 4 years ago
- Implementation of Metaformer, but in an autoregressive manner☆26Jun 21, 2022Updated 3 years ago
- Local Attention - Flax module for Jax☆22May 26, 2021Updated 5 years ago
- Implementation of Cross Transformer for spatially-aware few-shot transfer, in Pytorch☆54Mar 30, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Dec 27, 2022Updated 3 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Jun 2, 2022Updated 4 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆77Jun 8, 2021Updated 5 years ago
- A simple Transformer where the softmax has been replaced with normalization☆20Sep 11, 2020Updated 5 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆52Nov 20, 2023Updated 2 years ago
- Implementation of Hourglass Transformer, in Pytorch, from Google and OpenAI☆99Dec 31, 2021Updated 4 years ago
- Usable implementation of Mogrifier, a circuit for enhancing LSTMs and potentially other networks, from Deepmind☆22Jun 9, 2024Updated 2 years ago
- Implementation of an Attention layer where each head can attend to more than just one token, using coordinate descent to pick topk☆47Jul 16, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆54Jul 2, 2023Updated 2 years ago
- Implementation of the video diffusion model and training scheme presented in the paper, Flexible Diffusion Modeling of Long Videos, in Py…☆85May 28, 2022Updated 4 years ago
- Repository for code and models for the paper "Extrapolative Controlled Sequence Generation via Iterative Refinement"☆16Mar 5, 2024Updated 2 years ago
- Implementation of "compositional attention" from MILA, a multi-head attention variant that is reframed as a two-step attention process wi…☆51May 10, 2022Updated 4 years ago
- Implementation of TableFormer, Robust Transformer Modeling for Table-Text Encoding, in Pytorch☆39Mar 29, 2022Updated 4 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆167Aug 24, 2023Updated 2 years ago
- Another attempt at a long-context / efficient transformer by me☆38Apr 11, 2022Updated 4 years ago
- Graph neural network message passing reframed as a Transformer with local attention☆70Dec 24, 2022Updated 3 years ago
- Pytorch implementation of "Very Deep Graph Neural Networks via Noise Regularisation"☆10Aug 22, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Directed masked autoencoders☆15Mar 25, 2026Updated 2 months ago
- Some personal experiments around routing tokens to different autoregressive attention, akin to mixture-of-experts☆122Oct 17, 2024Updated last year
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆171Nov 25, 2022Updated 3 years ago
- Implementation of fused cosine similarity attention in the same style as Flash Attention☆220Feb 13, 2023Updated 3 years ago
- MSA Transformer reproduction code☆92Oct 21, 2021Updated 4 years ago
- Implementation of Mega, the Single-head Attention with Multi-headed EMA architecture that currently holds SOTA on Long Range Arena☆207Aug 26, 2023Updated 2 years ago
- Implementation and explorations into Blackbox Gradient Sensing (BGS), an evolutionary strategies approach proposed in a Google Deepmind p…☆20Apr 17, 2026Updated last month
- An attempt to merge ESBN with Transformers, to endow Transformers with the ability to emergently bind symbols☆16Aug 3, 2021Updated 4 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Implementation of the algorithm detailed in paper "Evolutionary design of molecules based on deep learning and a genetic algorithm"☆24Dec 15, 2023Updated 2 years ago
- An implementation of (Induced) Set Attention Block, from the Set Transformers paper☆70Jun 8, 2026Updated last week
- Explorations into the proposed Streaming Deep Reinforcement Learning, from University of Alberta☆33May 18, 2026Updated 3 weeks ago
- Code of the NVIDIA winning solution to the 2nd OGB-LSC at the NeurIPS 2022 challenge with dataset PCQM4Mv2☆17Nov 25, 2022Updated 3 years ago
- An implementation of the Equivariant Graph Neural Network (EGNN) layer type for DGL-PyTorch.☆15Dec 27, 2022Updated 3 years ago
- Voice Conversion using Tacotron.☆11Dec 29, 2022Updated 3 years ago
- Unsupervised Speech Decomposition via Triple Information Bottleneck☆14Apr 29, 2020Updated 6 years ago