Bitbol-Lab / Iterative_maskingLinks
Iterative masking algorithm on MSA Transformer to generate synthetic sequences
☆27Updated last year
Alternatives and similar repositories for Iterative_masking
Users that are interested in Iterative_masking are comparing it to the libraries listed below
Sorting:
- ☆71Updated 7 months ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- ☆44Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆82Updated 2 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆66Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 4 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆64Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆47Updated 6 months ago
- Machine learning prediction of enzyme optimum pH☆47Updated 5 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆68Updated 11 months ago
- Template-based protein design with Raygun☆74Updated last week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆82Updated last year
- ☆53Updated 2 months ago
- ☆30Updated last year
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆45Updated 11 months ago
- Extension of ThermoMPNN for double mutant predictions☆43Updated 2 weeks ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆40Updated 6 months ago
- PLM based active learning model for protein engineering☆84Updated last year
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆48Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆80Updated 2 years ago
- Fragment binding prediction with ColabFold☆37Updated 7 months ago
- ☆36Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆24Updated 4 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 5 months ago
- ☆42Updated last month
- ☆28Updated 2 years ago