Alternatives and similar repositories for Iterative_masking

Users that are interested in Iterative_masking are comparing it to the libraries listed below

• KULL-Centre / _2024_cagiada_stability
  ☆67Updated 2 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 4 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆40Updated last month
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆59Updated 3 months ago
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆23Updated 7 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆43Updated 6 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• BioinfoMachineLearning / MULTICOM3
  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…
  ☆28Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆37Updated 2 months ago
• bene837 / af2seq
  ☆43Updated 8 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated 4 months ago
• AbSciBio / igdesign
  ☆40Updated 4 months ago
• ELELAB / RosettaDDGPrediction
  ☆65Updated 3 months ago
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 3 years ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆35Updated last week
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆62Updated last year
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆56Updated 7 months ago
• coreyhowe999 / RSO
  ☆21Updated 7 months ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆66Updated 2 weeks ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆32Updated 2 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆41Updated last month
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆33Updated last month
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆35Updated 3 years ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆34Updated 2 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆27Updated last year
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆45Updated 4 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆30Updated 7 months ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆24Updated 9 months ago
• bwicky / oligomer_hallucination
  ☆35Updated last year