Bitbol-Lab / Iterative_maskingLinks
Iterative masking algorithm on MSA Transformer to generate synthetic sequences
☆28Updated 2 years ago
Alternatives and similar repositories for Iterative_masking
Users that are interested in Iterative_masking are comparing it to the libraries listed below
Sorting:
- ☆72Updated 10 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆46Updated 3 weeks ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆71Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- ☆47Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆44Updated 8 months ago
- ☆32Updated last year
- ☆47Updated last year
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 6 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆25Updated 8 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆62Updated 5 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆55Updated 9 months ago
- ☆41Updated 5 months ago
- Template-based protein design with Raygun☆76Updated this week
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆47Updated 2 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Updated 3 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated 3 months ago
- ☆91Updated last year
- Machine learning prediction of enzyme optimum pH☆50Updated 9 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 4 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Updated 3 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated 2 months ago
- ☆56Updated 5 months ago
- Extension of ThermoMPNN for double mutant predictions☆53Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- ☆114Updated 3 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆91Updated last month
- Public version for Distance-AF☆30Updated 5 months ago
- PLM based active learning model for protein engineering☆84Updated last year