Bitbol-Lab / Iterative_masking
Iterative masking algorithm on MSA Transformer to generate synthetic sequences
☆26Updated last year
Alternatives and similar repositories for Iterative_masking:
Users that are interested in Iterative_masking are comparing it to the libraries listed below
- ☆64Updated last week
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆38Updated 4 months ago
- Code for holographic machine learning of proteins☆22Updated 5 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 5 months ago
- LoRA for protein language models☆36Updated last year
- Graph Network for protein-protein interface including language model features☆30Updated last year
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- ☆43Updated 6 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆54Updated last month
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆28Updated 9 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Adapting protein language models for structure-conditioned design☆37Updated 7 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆28Updated 3 months ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- ☆25Updated 10 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆52Updated last month
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆56Updated 5 months ago
- Protein Design by Machine Learning guided Directed Evolution☆35Updated 8 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆34Updated 3 weeks ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆11Updated 2 years ago
- ☆17Updated last month
- ☆21Updated 5 months ago
- Generative diverse protein backbones by protein language model☆31Updated 3 months ago
- Machine learning prediction of enzyme optimum pH☆29Updated 2 weeks ago
- ☆80Updated 6 months ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆18Updated 2 years ago
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- Structure prediction of alternative protein conformations☆74Updated last month