rhondabacher / ISMB2019_SingleCellTutorialLinks
Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis
☆41Updated 6 years ago
Alternatives and similar repositories for ISMB2019_SingleCellTutorial
Users that are interested in ISMB2019_SingleCellTutorial are comparing it to the libraries listed below
Sorting:
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- ☆62Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 7 months ago
- ATAC-seq lab for BIOINF545☆24Updated 7 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- ☆55Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆43Updated last year
- ☆39Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- An R interface to enrichR☆92Updated 8 months ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆41Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- ☆58Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆69Updated 7 years ago