SPARCED model creation and simulation package.
☆12Oct 7, 2025Updated 4 months ago
Alternatives and similar repositories for SPARCED
Users that are interested in SPARCED are comparing it to the libraries listed below
Sorting:
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆11Feb 21, 2026Updated last week
- A Transcriptomics-Proteomics Integration Pipeline☆18Apr 11, 2024Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Dec 15, 2025Updated 2 months ago
- ☆11Jul 3, 2022Updated 3 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- Publications of all kind based on the Open Systems Pharmacology Suite☆17Aug 1, 2022Updated 3 years ago
- Tools for text processing of structured product labels☆12Mar 27, 2020Updated 5 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆39May 21, 2019Updated 6 years ago
- Data Standards Hackathon for NGS based typing.☆14Feb 2, 2026Updated 3 weeks ago
- Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preter…☆11May 13, 2023Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- Repeat-injection-based quality control, batch correction, exploration, & data cleaning.☆11Updated this week
- Static analyzer for dynamics of Automata Networks☆12Feb 3, 2021Updated 5 years ago
- ☆10Oct 18, 2021Updated 4 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Codebase for WHO estimates of excess mortality associated with the COVID-19 pandemic☆12Feb 25, 2023Updated 3 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 13 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆14Jul 3, 2024Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- QSP model of immune response to COVID19☆10Aug 11, 2020Updated 5 years ago
- ☆12Mar 15, 2025Updated 11 months ago
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Mar 7, 2018Updated 7 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago